Basic information
Locus name	LOC_Os02g56250
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:GATA
Effect for Senescence	Unclear
Gene Description	GATA zinc finger family protein, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function sequence-specific DNA binding transcription factor activity sequence-specific DNA binding zinc ion binding
Sequence	LOC_Os02g56250.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os02g56250  miRNA: osa-miR1858a miRNA: osa-miR1858a mfe: -32.6 kcal/mol  p-value: 0.023367  position:  1452  target 5' C    U G           G  G 3'             CUCC C UCGUCCUCCUC UC              GGGG G GGCAGGAGGAG AG   miRNA  3' C    U A                5'  target: LOC_Os02g56250  miRNA: osa-miR1858b miRNA: osa-miR1858b mfe: -32.6 kcal/mol  p-value: 0.023147  position:  1452  target 5' C    U G           G  G 3'             CUCC C UCGUCCUCCUC UC              GGGG G GGCAGGAGGAG AG   miRNA  3' C    U A                5'  target: LOC_Os02g56250  miRNA: osa-miR2104 miRNA: osa-miR2104 mfe: -33.8 kcal/mol  p-value: 0.050474  position:  1090  target 5' G   A G   C     C      C 3'             AUG U GCG UCCCC CGCCGC              UGC A CGU AGGGG GCGGCG   miRNA  3' G   G G         A        5'  target: LOC_Os02g56250  miRNA: osa-miR2906a miRNA: osa-miR2906a mfe: -36.2 kcal/mol  p-value: 0.008285  position:  2126  target 5' C       C G       G    C 3'             CCGGCGG G CGGCGGC UCGU              GGUCGUC C GCCGCCG GGCA   miRNA  3'         A              A 5'  target: LOC_Os02g56250  miRNA: osa-miR2906b miRNA: osa-miR2906b mfe: -36.2 kcal/mol  p-value: 0.007974  position:  2126  target 5' C       C G       G    C 3'             CCGGCGG G CGGCGGC UCGU              GGUCGUC C GCCGCCG GGCA   miRNA  3'         A              A 5'
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10071 1.5E-40 22 407 No hit NA SUPERFAMILY SSF57716 1.2E-14 328 391 No hit NA ProSiteProfiles PS50114 11.1 329 365 IPR000679 Zinc finger, GATA-type SMART SM00401 1.6E-15 329 379 IPR000679 Zinc finger, GATA-type Pfam PF00320 6.3E-15 335 368 IPR000679 Zinc finger, GATA-type ProSitePatterns PS00344 NA 335 360 IPR000679 Zinc finger, GATA-type