Basic information
Locus name	LOC_Os03g50290
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:Regulatory genes
Effect for Senescence	Unclear
Gene Description	14-3-3-like protein S94, putative, expressed
Evidence	Molecular evidence: SSH/Northern blot/RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	molecular function protein domain specific binding
Sequence	LOC_Os03g50290.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os03g50290  miRNA: osa-miR1847 miRNA: osa-miR1847 mfe: -28.9 kcal/mol  p-value: 0.021178  position:  861  target 5' C      U        G C  A 3'             UGCCAC GCUGCAGA U CA              ACGGUG UGACGUUU A GU   miRNA  3' C      U        G C    5'  target: LOC_Os03g50290  miRNA: osa-miR1850 miRNA: osa-miR1850 mfe: -27.4 kcal/mol  p-value: 0.030167  position:  350  target 5' C         C     A   C   C 3'             CCCCGAUCU CCCGG C U CCA              GGGGUUAGA GGGUU G A GGU   miRNA  3'                   A A     5'  target: LOC_Os03g50290  miRNA: osa-miR2055 miRNA: osa-miR2055 mfe: -29.8 kcal/mol  p-value: 0.011156  position:  226  target 5' C    G G            C 3'             AGGC A CUUCCCGAGGAG              UUUG U GAAGGGUUCCUU   miRNA  3' C    G G            U 5'  target: LOC_Os03g50290  miRNA: osa-miR2118o miRNA: osa-miR2118o mfe: -32.6 kcal/mol  p-value: 0.006945  position:  687  target 5' U   U   C  A        U    G 3'             UGG GCU GG GGGCAUCG GGAG              AUC CGA CC UCCGUAGU CCUC   miRNA  3'         A  C               5'  target: LOC_Os03g50290  miRNA: osa-miR2864 miRNA: osa-miR2864 mfe: -21.3 kcal/mol  p-value: 0.092791  position:  1222  target 5' G    C G           G U 3'             ACCU U ACAAUGCGGAG A              UGGA A UGUUACGUUUU U   miRNA  3' A    U             G U 5'  target: LOC_Os03g50290  miRNA: osa-miR2873 miRNA: osa-miR2873 mfe: -23.4 kcal/mol  p-value: 0.015717  position:  923  target 5' C                A G    G 3'             UUGCUGAGUUUAAGUC G AGCU              AAUGGUUUAAAUUCAG U UUGA   miRNA  3' C                G      A 5'  target: LOC_Os03g50290  miRNA: osa-miR414 miRNA: osa-miR414 mfe: -27.6 kcal/mol  p-value: 0.003947  position:  1236  target 5' C   G           C     U 3'             GGA GAUGGUGGUGA GA GA              CCU CUACUACUACU CU CU   miRNA  3'     G           C  A    5'
Ortholog Group
Ortholog Groups: OG5_126706	Accession Taxon NP_001031868 Arabidopsis thaliana NP_001031982 Arabidopsis thaliana NP_001077649 Arabidopsis thaliana NP_001154216 Arabidopsis thaliana NP_564167 Arabidopsis thaliana NP_564249 Arabidopsis thaliana NP_564451 Arabidopsis thaliana NP_564453 Arabidopsis thaliana NP_565176 Arabidopsis thaliana NP_566174 Arabidopsis thaliana NP_567344 Arabidopsis thaliana NP_568229 Arabidopsis thaliana NP_568325 Arabidopsis thaliana NP_568557 Arabidopsis thaliana NP_569012 Arabidopsis thaliana NP_849698 Arabidopsis thaliana NP_851274 Arabidopsis thaliana NP_973884 Arabidopsis thaliana CMP239C Cyanidioschyzon merolae strain 10D 185967 Chlamydomonas reinhardtii 187228 Chlamydomonas reinhardtii ACO61927 Micromonas sp. RCC299 ACO63066 Micromonas sp. RCC299 NP_001047234 Oryza sativa Japonica Group NP_001051051 ( LOC_Os03g50290 ) Oryza sativa Japonica Group NP_001053003 Oryza sativa Japonica Group NP_001061856 Oryza sativa Japonica Group NP_001068067 Oryza sativa Japonica Group gw1.18.00.170.1 Ostreococcus tauri estExt_Genewise1.C_1400036 Physcomitrella patens subsp. patens estExt_Genewise1.C_2010026 Physcomitrella patens subsp. patens estExt_Genewise1.C_670097 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_3480002 Physcomitrella patens subsp. patens estExt_fgenesh2_pg.C_1370075 Physcomitrella patens subsp. patens estExt_fgenesh2_pg.C_730052 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1370068 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_73000051 Physcomitrella patens subsp. patens gw1.46.9.1 Physcomitrella patens subsp. patens 28842.m000907 Ricinus communis 29908.m006038 Ricinus communis 29908.m006068 Ricinus communis 29908.m006234 Ricinus communis 30174.m009120 Ricinus communis estExt_fgenesh1_pm.C_chr_30002 Thalassiosira pseudonana CCMP1335
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR18860 4.4E-188 6 256 IPR000308 14-3-3 protein PIRSF PIRSF000868 2.8E-181 6 250 IPR000308 14-3-3 protein SUPERFAMILY SSF48445 3.8E-104 7 240 IPR023410 14-3-3 domain Pfam PF00244 7.2E-114 8 244 IPR023410 14-3-3 domain SMART SM00101 1.1E-209 8 251 IPR023410 14-3-3 domain Coils Coil NA 14 35 No hit NA PRINTS PR00305 8.3E-89 42 71 IPR000308 14-3-3 protein ProSitePatterns PS00796 NA 48 58 IPR023409 14-3-3 protein, conserved site PRINTS PR00305 8.3E-89 91 115 IPR000308 14-3-3 protein PRINTS PR00305 8.3E-89 122 144 IPR000308 14-3-3 protein PRINTS PR00305 8.3E-89 157 183 IPR000308 14-3-3 protein PRINTS PR00305 8.3E-89 184 210 IPR000308 14-3-3 protein PRINTS PR00305 8.3E-89 211 240 IPR000308 14-3-3 protein ProSitePatterns PS00797 NA 220 239 IPR023409 14-3-3 protein, conserved site