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Locus name | LOC_Os03g55164 |
Organism | Rice (Oryza sativa) |
Taxonomic identifier | [NCBI] |
Function category | Transcription regulation:WRKY |
Effect for Senescence | Unclear |
Gene Description | WRKY DNA binding domain containing protein, expressed |
Evidence | Molecular evidence: SSH/Northern blot/RT-PCR [Ref 1] |
References | 1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin YIdentification of early senescence-associated genes in rice flag leaves.Plant Mol. Biol. 2008 May;67(1-2):37-55 |
Gene Ontology | |
Sequence | LOC_Os03g55164.1 | Genomic | mRNA | CDS | Protein
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miRNA Interaction | |
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Details | | target: LOC_Os03g55164 miRNA: osa-miR1427 miRNA: osa-miR1427 mfe: -33.0 kcal/mol p-value: 0.018638
position: 142 target 5' C A G C C U C 3' GC GC GCCG CACGG UCC GCG CG CG UGGC GUGCC AGG CGU miRNA 3' G A 5'
target: LOC_Os03g55164 miRNA: osa-miR1440 miRNA: osa-miR1440 mfe: -24.9 kcal/mol p-value: 0.011794
position: 1032 target 5' G C A G A 3' AGGAG GG GGUGU U GAGCA UCCUC UC CCAUA A CUCGU miRNA 3' A A 5'
target: LOC_Os03g55164 miRNA: osa-miR1440 miRNA: osa-miR1440 mfe: -24.9 kcal/mol p-value: 0.011794
position: 1828 target 5' C C G 3' AGGAGAG GGUGUU GA CG UCCUCUC CCAUAA CU GU miRNA 3' A A C 5'
target: LOC_Os03g55164 miRNA: osa-miR168b miRNA: osa-miR168b mfe: -30.5 kcal/mol p-value: 0.070819
position: 3103 target 5' C U G U C 3' UCCUG GUUGCAC GA GCUU AGGGC CGACGUG UU CGGA miRNA 3' A U G 5'
target: LOC_Os03g55164 miRNA: osa-miR169d miRNA: osa-miR169d mfe: -27.5 kcal/mol p-value: 0.020103
position: 3368 target 5' G U G C 3' C GCAGUUUGUCU UGGCUG G CGUUAAGUAGG ACCGAU miRNA 3' G C A 5'
target: LOC_Os03g55164 miRNA: osa-miR169p miRNA: osa-miR169p mfe: -31.0 kcal/mol p-value: 0.003426
position: 3364 target 5' U U C G C 3' CUGGC G AGUUUGUCU UGGCUG GGCCG U UCAAACAGG ACCGAU miRNA 3' A 5'
target: LOC_Os03g55164 miRNA: osa-miR1858a miRNA: osa-miR1858a mfe: -32.0 kcal/mol p-value: 0.032182
position: 181 target 5' U G G C 3' GCCCC GC CCGUCC CC UUC CGGGG UG GGCAGG GG GAG miRNA 3' A A A 5'
target: LOC_Os03g55164 miRNA: osa-miR1858b miRNA: osa-miR1858b mfe: -32.0 kcal/mol p-value: 0.030361
position: 181 target 5' U G G C 3' GCCCC GC CCGUCC CC UUC CGGGG UG GGCAGG GG GAG miRNA 3' A A A 5'
target: LOC_Os03g55164 miRNA: osa-miR2104 miRNA: osa-miR2104 mfe: -35.0 kcal/mol p-value: 0.038152
position: 164 target 5' G G G C G 3' CGC GC CGCGUCCCCU GCC C GUG CG GCGUAGGGGA CGG G miRNA 3' A G C 5'
target: LOC_Os03g55164 miRNA: osa-miR2864 miRNA: osa-miR2864 mfe: -25.5 kcal/mol p-value: 0.192117
position: 2712 target 5' G A A 3' GUGGGGC AAGGGUGGUGAGG CGUUUUG UUCCCGUCGUUUU miRNA 3' A 5'
target: LOC_Os03g55164 miRNA: osa-miR2864 miRNA: osa-miR2864 mfe: -26.7 kcal/mol p-value: 0.126827
position: 2687 target 5' G U U 3' GCA GACAGGGGU GUAGA CGU UUGUUCCCG CGUUU miRNA 3' A U U U 5'
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Ortholog Group | |
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Ortholog Groups: OG5_170546 | |
Cross Link | |
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