Basic information
Locus name	LOC_Os03g55164
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:WRKY
Effect for Senescence	Unclear
Gene Description	WRKY DNA binding domain containing protein, expressed
Evidence	Molecular evidence: SSH/Northern blot/RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function sequence-specific DNA binding transcription factor activity sequence-specific DNA binding
Sequence	LOC_Os03g55164.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os03g55164  miRNA: osa-miR1427 miRNA: osa-miR1427 mfe: -33.0 kcal/mol  p-value: 0.018638  position:  142  target 5' C  A  G    C     C   U   C 3'             GC GC GCCG CACGG UCC GCG              CG CG UGGC GUGCC AGG CGU   miRNA  3'       G          A         5'  target: LOC_Os03g55164  miRNA: osa-miR1440 miRNA: osa-miR1440 mfe: -24.9 kcal/mol  p-value: 0.011794  position:  1032  target 5' G     C        A G     A 3'             AGGAG GG GGUGU U GAGCA              UCCUC UC CCAUA A CUCGU   miRNA  3'          A     A         5'  target: LOC_Os03g55164  miRNA: osa-miR1440 miRNA: osa-miR1440 mfe: -24.9 kcal/mol  p-value: 0.011794  position:  1828  target 5' C              C     G 3'             AGGAGAG GGUGUU GA CG              UCCUCUC CCAUAA CU GU   miRNA  3'         A      A  C    5'  target: LOC_Os03g55164  miRNA: osa-miR168b miRNA: osa-miR168b mfe: -30.5 kcal/mol  p-value: 0.070819  position:  3103  target 5' C     U       G  U    C 3'             UCCUG GUUGCAC GA GCUU              AGGGC CGACGUG UU CGGA   miRNA  3' A     U       G         5'  target: LOC_Os03g55164  miRNA: osa-miR169d miRNA: osa-miR169d mfe: -27.5 kcal/mol  p-value: 0.020103  position:  3368  target 5' G U           G      C 3'             C GCAGUUUGUCU UGGCUG              G CGUUAAGUAGG ACCGAU   miRNA  3' G C           A        5'  target: LOC_Os03g55164  miRNA: osa-miR169p miRNA: osa-miR169p mfe: -31.0 kcal/mol  p-value: 0.003426  position:  3364  target 5' U     U C         G      C 3'             CUGGC G AGUUUGUCU UGGCUG              GGCCG U UCAAACAGG ACCGAU   miRNA  3'                   A        5'  target: LOC_Os03g55164  miRNA: osa-miR1858a miRNA: osa-miR1858a mfe: -32.0 kcal/mol  p-value: 0.032182  position:  181  target 5' U     G            G   C 3'             GCCCC GC CCGUCC CC UUC              CGGGG UG GGCAGG GG GAG   miRNA  3'          A      A  A     5'  target: LOC_Os03g55164  miRNA: osa-miR1858b miRNA: osa-miR1858b mfe: -32.0 kcal/mol  p-value: 0.030361  position:  181  target 5' U     G            G   C 3'             GCCCC GC CCGUCC CC UUC              CGGGG UG GGCAGG GG GAG   miRNA  3'          A      A  A     5'  target: LOC_Os03g55164  miRNA: osa-miR2104 miRNA: osa-miR2104 mfe: -35.0 kcal/mol  p-value: 0.038152  position:  164  target 5' G   G  G              C G 3'             CGC GC CGCGUCCCCU GCC C              GUG CG GCGUAGGGGA CGG G   miRNA  3'        A          G   C   5'  target: LOC_Os03g55164  miRNA: osa-miR2864 miRNA: osa-miR2864 mfe: -25.5 kcal/mol  p-value: 0.192117  position:  2712  target 5' G       A             A 3'             GUGGGGC AAGGGUGGUGAGG              CGUUUUG UUCCCGUCGUUUU   miRNA  3' A                       5'  target: LOC_Os03g55164  miRNA: osa-miR2864 miRNA: osa-miR2864 mfe: -26.7 kcal/mol  p-value: 0.126827  position:  2687  target 5' G   U               U 3'             GCA GACAGGGGU GUAGA              CGU UUGUUCCCG CGUUU   miRNA  3' A   U         U     U 5'
Ortholog Group
Ortholog Groups: OG5_170546	Accession Taxon NP_189563 Arabidopsis thaliana NP_850647 Arabidopsis thaliana NP_001051337 ( LOC_Os03g55164 ) Oryza sativa Japonica Group gw1.54.79.1 Physcomitrella patens subsp. patens 28124.m000248 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF50814 1.6E-12 126 202 IPR011038 Calycin-like SUPERFAMILY SSF50814 1.6E-12 229 286 IPR011038 Calycin-like Pfam PF12204 7.1E-11 250 440 IPR022017 Domain of unknown function DUF3598 SUPERFAMILY SSF50814 3.3E-30 301 443 IPR011038 Calycin-like PANTHER PTHR31221 2.2E-81 734 962 No hit NA ProSiteProfiles PS50811 22.8 751 815 IPR003657 DNA-binding WRKY SUPERFAMILY SSF118290 1.1E-22 755 815 IPR003657 DNA-binding WRKY SMART SM00774 9.8E-31 756 814 IPR003657 DNA-binding WRKY Pfam PF03106 7.7E-26 757 813 IPR003657 DNA-binding WRKY SUPERFAMILY SSF118290 1.6E-27 894 962 IPR003657 DNA-binding WRKY ProSiteProfiles PS50811 36.1 897 962 IPR003657 DNA-binding WRKY Pfam PF03106 1.1E-29 902 960 IPR003657 DNA-binding WRKY SMART SM00774 4.4E-36 902 961 IPR003657 DNA-binding WRKY