Basic information
Locus name	LOC_Os06g51220
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:Regulatory genes
Effect for Senescence	Unclear
Gene Description	DNA-binding protein MNB1B, putative, expressed
Evidence	Molecular evidence: SSH/Northern blot/RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Sequence	LOC_Os06g51220.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os06g51220  miRNA: osa-miR2864 miRNA: osa-miR2864 mfe: -26.1 kcal/mol  p-value: 0.055095  position:  678  target 5' A  A   C  U            C 3'             GC AGA GC AAGGGCGGCGGG              CG UUU UG UUCCCGUCGUUU   miRNA  3' A                      U 5'
Ortholog Group
Ortholog Groups: OG5_126740	Accession Taxon NP_001031074 Arabidopsis thaliana NP_001031075 Arabidopsis thaliana NP_001077569 Arabidopsis thaliana NP_001077570 Arabidopsis thaliana NP_001078269 Arabidopsis thaliana NP_190756 Arabidopsis thaliana NP_564123 Arabidopsis thaliana NP_564124 Arabidopsis thaliana NP_974413 Arabidopsis thaliana 142283 Chlamydomonas reinhardtii 151215 Chlamydomonas reinhardtii 192899 Chlamydomonas reinhardtii ACO61991 Micromonas sp. RCC299 ACO61992 Micromonas sp. RCC299 ACO64826 Micromonas sp. RCC299 NP_001058640 ( LOC_Os06g51220 ) Oryza sativa Japonica Group estExt_fgenesh1_pg.C_Chr_15.00010198 Ostreococcus tauri gw1.17.00.287.1 Ostreococcus tauri e_gw1.34.410.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_880025 Physcomitrella patens subsp. patens gw1.106.59.1 Physcomitrella patens subsp. patens gw1.106.60.1 Physcomitrella patens subsp. patens 29669.m000844 Ricinus communis 29701.m000600 Ricinus communis e_gw1.11a.185.1 Thalassiosira pseudonana CCMP1335 e_gw1.12.237.1 Thalassiosira pseudonana CCMP1335 e_gw1.2.827.1 Thalassiosira pseudonana CCMP1335 XP_002945803 Volvox carteri f. nagariensis XP_002957151 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF47095 1.2E-24 28 112 IPR009071 High mobility group (HMG) box domain PANTHER PTHR13711 6.8E-36 29 157 No hit NA SMART SM00398 1.5E-25 41 112 IPR009071 High mobility group (HMG) box domain Pfam PF00505 1.3E-24 42 111 IPR009071 High mobility group (HMG) box domain ProSiteProfiles PS50118 19.2 42 111 IPR009071 High mobility group (HMG) box domain