Basic information
Locus name	LOC_Os08g06140
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:NAC
Effect for Senescence	Unclear
Gene Description	No apical meristem protein, expressed
Evidence	Molecular evidence:SSH/Northern/RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function DNA binding
Sequence	LOC_Os08g06140.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os08g06140  miRNA: osa-miR2100-3p miRNA: osa-miR2100-3p mfe: -30.2 kcal/mol  p-value: 0.036089  position:  2508  target 5' G  C  G                G 3'             CC UU UGUUUAGACGGCGGUU              GG GA GCGGAUUUGUCGCCAA   miRNA  3'    U  G                  5'  target: LOC_Os08g06140  miRNA: osa-miR2275a miRNA: osa-miR2275a mfe: -26.4 kcal/mol  p-value: 0.041382  position:  177  target 5' A    G            G  U 3'             GAGA GUUGGGGGAGGU GA              CUCU UAACCUCCUUUG UU   miRNA  3' A    A            G  U 5'  target: LOC_Os08g06140  miRNA: osa-miR2275b miRNA: osa-miR2275b mfe: -26.4 kcal/mol  p-value: 0.037685  position:  177  target 5' A    G            G  U 3'             GAGA GUUGGGGGAGGU GA              CUCU UAACCUCCUUUG UU   miRNA  3' A    A            G  U 5'  target: LOC_Os08g06140  miRNA: osa-miR2862 miRNA: osa-miR2862 mfe: -26.4 kcal/mol  p-value: 0.012762  position:  1304  target 5' U              G G     A 3'             GGAUG AUCUGAGU G UUGGA              CCUGC UAGAUUCG C AACCU   miRNA  3'       U        A         5'  target: LOC_Os08g06140  miRNA: osa-miR2863b miRNA: osa-miR2863b mfe: -24.7 kcal/mol  p-value: 0.020166  position:  1335  target 5' U               C    A 3'             UUCUGG CCAGAUGA CGAA              GAGAUC GGUUUAUU GCUU   miRNA  3' U      A        U      5'  target: LOC_Os08g06140  miRNA: osa-miR2866 miRNA: osa-miR2866 mfe: -23.2 kcal/mol  p-value: 0.069460  position:  1638  target 5' U                    G 3'             GAUG UGAGCAUG ACUAGA              CUAC ACUUGUGU UGAUCU   miRNA  3'      G        U        5'  target: LOC_Os08g06140  miRNA: osa-miR529a miRNA: osa-miR529a mfe: -24.9 kcal/mol  p-value: 0.078718  position:  189  target 5' G    U   U       C G  A 3'             GAGG GGA GAGAGGG G AG              CUUC UCU CUCUCCC U UC   miRNA  3'      U           A G    5'  target: LOC_Os08g06140  miRNA: osa-miR529a miRNA: osa-miR529a mfe: -25.4 kcal/mol  p-value: 0.064520  position:  169  target 5' A   U          U  G  G 3'             GAG GAGAGAGAGG UG GG              UUC UUCUCUCUCC AU UC   miRNA  3' C              C  G    5'
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31989 2.3E-130 1 599 No hit NA SUPERFAMILY SSF101941 7.9E-59 3 163 IPR003441 No apical meristem (NAM) protein Pfam PF02365 8.4E-50 9 142 IPR003441 No apical meristem (NAM) protein ProSiteProfiles PS51005 57.5 9 163 IPR003441 No apical meristem (NAM) protein Coils Coil NA 669 690 No hit NA