Basic information
Locus name	LOC_Os08g14450
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:Sigma-70
Effect for Senescence	Unclear
Gene Description	Sigma-70 region 2 family protein, expressed
Evidence	Molecular evidence: SSH/Northern blot/RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process DNA-dependent transcription, initiation regulation of transcription, DNA-dependent molecular function DNA binding sequence-specific DNA binding transcription factor activity sigma factor activity
Sequence	LOC_Os08g14450.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os08g14450  miRNA: osa-miR1858a miRNA: osa-miR1858a mfe: -32.4 kcal/mol  p-value: 0.022778  position:  193  target 5' A         U        G   U 3'             GCCUC CUC CGUCC CC CUC              CGGGG GAG GCAGG GG GAG   miRNA  3'       U         A  A     5'  target: LOC_Os08g14450  miRNA: osa-miR1858a miRNA: osa-miR1858a mfe: -33.8 kcal/mol  p-value: 0.013789  position:  274  target 5' U                 C   C 3'             CCUC C CCGUCCUCCU CUC              GGGG G GGCAGGAGGA GAG   miRNA  3' C    U A                5'  target: LOC_Os08g14450  miRNA: osa-miR1858b miRNA: osa-miR1858b mfe: -32.4 kcal/mol  p-value: 0.022651  position:  193  target 5' A         U        G   U 3'             GCCUC CUC CGUCC CC CUC              CGGGG GAG GCAGG GG GAG   miRNA  3'       U         A  A     5'  target: LOC_Os08g14450  miRNA: osa-miR1858b miRNA: osa-miR1858b mfe: -33.8 kcal/mol  p-value: 0.014807  position:  274  target 5' U                 C   C 3'             CCUC C CCGUCCUCCU CUC              GGGG G GGCAGGAGGA GAG   miRNA  3' C    U A                5'  target: LOC_Os08g14450  miRNA: osa-miR2097-3p miRNA: osa-miR2097-3p mfe: -25.8 kcal/mol  p-value: 0.091976  position:  146  target 5' U          G      C  C   G 3'             AGGUGCGGCG CGGAGG GG GGA              UUUACGCUGU GCUUCU CU CUU   miRNA  3'                   U        5'
Ortholog Group
Ortholog Groups: OG5_190909	Accession Taxon NP_565856 Arabidopsis thaliana NP_001061343 ( LOC_Os08g14450 ) Oryza sativa Japonica Group 30078.m002307 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF000767 0.0 1 572 IPR016262 RNA polymerase sigma factor, SigB/SigC/SigD, plastid PANTHER PTHR30603 3.2E-125 14 571 No hit NA SUPERFAMILY SSF88946 2.1E-46 69 119 IPR013325 RNA polymerase sigma factor, region 2 SUPERFAMILY SSF88946 2.1E-46 153 283 IPR013325 RNA polymerase sigma factor, region 2 SUPERFAMILY SSF88659 1.2E-6 285 328 IPR013324 RNA polymerase sigma factor, region 3/4 Pfam PF04539 8.6E-6 290 331 IPR007624 RNA polymerase sigma-70 region 3 SUPERFAMILY SSF88946 2.1E-46 321 404 IPR013325 RNA polymerase sigma factor, region 2 TIGRFAM TIGR02937 2.0E-33 333 557 IPR014284 RNA polymerase sigma-70 like domain Pfam PF04542 2.1E-19 338 406 IPR007627 RNA polymerase sigma-70 region 2 PRINTS PR00046 3.8E-19 361 374 IPR000943 RNA polymerase sigma-70 PRINTS PR00046 3.8E-19 385 393 IPR000943 RNA polymerase sigma-70 SUPERFAMILY SSF88659 7.7E-6 410 482 IPR013324 RNA polymerase sigma factor, region 3/4 Pfam PF04539 4.7E-13 417 489 IPR007624 RNA polymerase sigma-70 region 3 SUPERFAMILY SSF88659 5.1E-22 468 559 IPR013324 RNA polymerase sigma factor, region 3/4 Pfam PF04545 7.1E-17 505 557 IPR007630 RNA polymerase sigma-70 region 4 PRINTS PR00046 3.8E-19 508 520 IPR000943 RNA polymerase sigma-70 PRINTS PR00046 3.8E-19 529 544 IPR000943 RNA polymerase sigma-70 PRINTS PR00046 3.8E-19 544 555 IPR000943 RNA polymerase sigma-70