Basic information
Locus name	LOC_Os08g17400
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:WRKY
Effect for Senescence	Unclear
Gene Description	WRKY DNA binding domain containing protein, expressed
Evidence	Molecular evidence: SSH/Northern blot/RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function sequence-specific DNA binding transcription factor activity sequence-specific DNA binding
Sequence	LOC_Os08g17400.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os08g17400  miRNA: osa-miR1846d-3p miRNA: osa-miR1846d-3p mfe: -32.2 kcal/mol  p-value: 0.023853  position:  493  target 5' C  A    A             G 3'             CC UCCU GCGGUGCC GAUG              GG AGGG CGCCGCGG CUAU   miRNA  3'         A        C      5'  target: LOC_Os08g17400  miRNA: osa-miR2118h miRNA: osa-miR2118h mfe: -30.5 kcal/mol  p-value: 0.016464  position:  238  target 5' G         A            A 3'             UGGGGGUGA GGGUA CGGGGA              AUCCUUACU UCCGU GUCCUU   miRNA  3'           C     A        5'  target: LOC_Os08g17400  miRNA: osa-miR2118k miRNA: osa-miR2118k mfe: -30.5 kcal/mol  p-value: 0.015039  position:  238  target 5' G         A            A 3'             UGGGGGUGA GGGUA CGGGGA              AUCCUUACU UCCGU GUCCUU   miRNA  3'           C     A        5'
Cross Link
Database Entry ID E-value Start End InterPro ID Description ProSiteProfiles PS50811 21.7 222 286 IPR003657 DNA-binding WRKY SUPERFAMILY SSF118290 7.3E-24 222 286 IPR003657 DNA-binding WRKY SMART SM00774 9.4E-33 227 285 IPR003657 DNA-binding WRKY Pfam PF03106 1.5E-27 228 284 IPR003657 DNA-binding WRKY PANTHER PTHR31221 6.5E-65 229 460 No hit NA ProSiteProfiles PS50811 32.8 390 455 IPR003657 DNA-binding WRKY SUPERFAMILY SSF118290 1.6E-27 390 455 IPR003657 DNA-binding WRKY SMART SM00774 2.0E-36 395 454 IPR003657 DNA-binding WRKY Pfam PF03106 3.0E-29 396 453 IPR003657 DNA-binding WRKY