Basic information
Locus name	LOC_Os08g41280
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Hormone response pathway:Auxin
Effect for Senescence	unclear
Gene Description	Auxin-induced protein, putative, expressed
Evidence	Molecular evidence: SSH/Northern blot/RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	cellular component integral to membrane
Sequence	LOC_Os08g41280.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os08g41280  miRNA: osa-miR1848 miRNA: osa-miR1848 mfe: -41.3 kcal/mol  p-value: 0.001468  position:  246  target 5' G                    G 3'             GCG GUG GCGCCGGCGAGG              CGU CGC CGCGGCCGCUCC   miRNA  3' A   G   G              5'  target: LOC_Os08g41280  miRNA: osa-miR2864 miRNA: osa-miR2864 mfe: -30.5 kcal/mol  p-value: 0.014320  position:  254  target 5' C  C                 G 3'             GC G GCGAGGGCGGCAGGA              CG U UGUUCCCGUCGUUUU   miRNA  3' A  U U                 5'
Ortholog Group
Ortholog Groups: OG5_136176	Accession Taxon NP_001030764 Arabidopsis thaliana NP_193034 Arabidopsis thaliana NP_193461 Arabidopsis thaliana NP_199564 Arabidopsis thaliana NP_566763 Arabidopsis thaliana NP_568531 Arabidopsis thaliana NP_001049254 Oryza sativa Japonica Group NP_001062286 ( LOC_Os08g41280 ) Oryza sativa Japonica Group NP_001063579 Oryza sativa Japonica Group estExt_fgenesh1_pg.C_Chr_04.00010195 Ostreococcus tauri fgenesh1_pg.C_Chr_09.0001000138 Ostreococcus tauri e_gw1.310.34.1 Physcomitrella patens subsp. patens e_gw1.57.29.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_1910062 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_3810001 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2880014 Physcomitrella patens subsp. patens 28708.m000184 Ricinus communis 29608.m000206 Ricinus communis 29964.m000155 Ricinus communis fgenesh1_pg.C_chr_20000182 Thalassiosira pseudonana CCMP1335
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF037471 5.7E-269 1 390 IPR017214 Uncharacterised conserved protein UCP037471 PANTHER PTHR23130 2.4E-139 29 375 No hit NA SMART SM00664 1.0E-13 45 192 IPR005018 DOMON domain ProSiteProfiles PS50836 16.1 46 162 IPR005018 DOMON domain Pfam PF04526 1.8E-28 88 187 IPR017214 Uncharacterised conserved protein UCP037471 ProSiteProfiles PS50939 35.7 168 368 IPR006593 Cytochrome b561/ferric reductase transmembrane SMART SM00665 1.2E-46 207 332 IPR006593 Cytochrome b561/ferric reductase transmembrane Pfam PF03188 7.3E-8 219 332 IPR004877 Cytochrome b561, eukaryote