Basic information
Locus name	LOC_Os11g43900
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Others:Translation
Effect for Senescence	Unclear
Gene Description	Translationally-controlled tumor protein homolog, putative, expressed
Evidence	Molecular evidence: SSH/Northern blot/RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Sequence	LOC_Os11g43900.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os11g43900  miRNA: osa-miR414 miRNA: osa-miR414 mfe: -33.1 kcal/mol  p-value: 0.000166  position:  278  target 5' U                    U 3'             GG UGGUGAUGAUGAGGGUG              CC GCUACUACUACUCCUAC   miRNA  3'    U                 U 5'
Ortholog Group
Ortholog Groups: OG5_127617	Accession Taxon NP_187205 Arabidopsis thaliana NP_188286 Arabidopsis thaliana CMQ113C Cyanidioschyzon merolae strain 10D NP_001068405 ( LOC_Os11g43900 ) Oryza sativa Japonica Group estExt_Genewise1.C_270023 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_33000130 Physcomitrella patens subsp. patens 29726.m004052 Ricinus communis 30128.m008835 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description Pfam PF00838 4.7E-66 1 165 IPR018105 Translationally controlled tumour protein PRINTS PR01653 2.5E-26 1 21 IPR018105 Translationally controlled tumour protein SUPERFAMILY SSF51316 9.8E-61 1 168 IPR011057 Mss4-like PANTHER PTHR11991 3.3E-84 2 168 IPR018105 Translationally controlled tumour protein ProSitePatterns PS01002 NA 45 55 IPR018103 Translationally controlled tumour protein, conserved site PRINTS PR01653 2.5E-26 46 57 IPR018105 Translationally controlled tumour protein PRINTS PR01653 2.5E-26 60 79 IPR018105 Translationally controlled tumour protein ProSitePatterns PS01003 NA 125 147 IPR018103 Translationally controlled tumour protein, conserved site