Basic information
Locus name	LOC_Os01g20830
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Others:Detoxification
Effect for Senescence	Unclear
Gene Description	Heavy metal-associated domain containing protein
Evidence	Molecular evidence: SSH/Northern blot/RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process metal ion transport molecular function metal ion binding
Sequence	LOC_Os01g20830.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os01g20830  miRNA: osa-miR1857-5p miRNA: osa-miR1857-5p mfe: -24.9 kcal/mol  p-value: 0.048703  position:  276  target 5' U     A               U 3'             CCUCG GCUUCAGG AAGCUA              GGAGU CGAGGUUU UUUGGU   miRNA  3'       A        U        5'  target: LOC_Os01g20830  miRNA: osa-miR2102-3p miRNA: osa-miR2102-3p mfe: -38.0 kcal/mol  p-value: 0.005176  position:  646  target 5' G      A             C 3'             GCCG C GAGCCGGCACCAU              CGGU G CUUGGCCGUGGUA   miRNA  3' G    G C             C 5'
Ortholog Group
Ortholog Groups: OG5_242573	Accession Taxon NP_001042852 ( LOC_Os01g20830 ) Oryza sativa Japonica Group 29726.m004108 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR22814 2.5E-155 8 241 No hit NA SUPERFAMILY SSF55008 1.0E-15 9 67 IPR006121 Heavy metal-associated domain, HMA Pfam PF00403 3.6E-13 15 67 IPR006121 Heavy metal-associated domain, HMA ProSiteProfiles PS50846 11.8 17 72 IPR006121 Heavy metal-associated domain, HMA