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| Locus name | LOC_Os01g55650 |
| Organism | Rice (Oryza sativa) |
| Taxonomic identifier | [NCBI] |
| Function category | Others:Pathogenicity and stress |
| Effect for Senescence | Unclear |
| Gene Description | Patatin, putative, expressed |
| Evidence | Molecular evidence: SSH/Northern blot/RT-PCR [Ref 1] |
| References | 1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin YIdentification of early senescence-associated genes in rice flag leaves.Plant Mol. Biol. 2008 May;67(1-2):37-55 |
| Gene Ontology | |
| Pathway | |
| Sequence | LOC_Os01g55650.1 | Genomic | mRNA | CDS | Protein
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miRNA Interaction  | |
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| Details | | target: LOC_Os01g55650
miRNA: osa-miR1435
miRNA: osa-miR1435
mfe: -18.4 kcal/mol
p-value: 0.091531
position: 2947
target 5' G C C 3'
GAGAAG UUGACU AGGGG
UUUUUC AACUGA UUCUU
miRNA 3' A A U 5'
target: LOC_Os01g55650
miRNA: osa-miR160a
miRNA: osa-miR160a
mfe: -32.1 kcal/mol
p-value: 0.048580
position: 427
target 5' C G G 3'
GG GUGC GGGGGC GGGCG
CC UAUG CCCUCG UCCGU
miRNA 3' A G U G 5'
target: LOC_Os01g55650
miRNA: osa-miR160b
miRNA: osa-miR160b
mfe: -32.1 kcal/mol
p-value: 0.049453
position: 427
target 5' C G G 3'
GG GUGC GGGGGC GGGCG
CC UAUG CCCUCG UCCGU
miRNA 3' A G U G 5'
target: LOC_Os01g55650
miRNA: osa-miR160c
miRNA: osa-miR160c
mfe: -32.1 kcal/mol
p-value: 0.044276
position: 427
target 5' C G G 3'
GG GUGC GGGGGC GGGCG
CC UAUG CCCUCG UCCGU
miRNA 3' A G U G 5'
target: LOC_Os01g55650
miRNA: osa-miR160d
miRNA: osa-miR160d
mfe: -32.1 kcal/mol
p-value: 0.048658
position: 427
target 5' C G G 3'
GG GUGC GGGGGC GGGCG
CC UAUG CCCUCG UCCGU
miRNA 3' A G U G 5'
target: LOC_Os01g55650
miRNA: osa-miR160e
miRNA: osa-miR160e
mfe: -32.7 kcal/mol
p-value: 0.041830
position: 426
target 5' G G G 3'
CGG GUGC GGGGGC GGGCG
GCC UAUG CCCUCG UCCGU
miRNA 3' G U G 5'
target: LOC_Os01g55650
miRNA: osa-miR1848
miRNA: osa-miR1848
mfe: -37.6 kcal/mol
p-value: 0.017409
position: 208
target 5' A G A G 3'
GCA CG G GCGCCGGUGGGG
CGU GC C CGCGGCCGCUCC
miRNA 3' A G G 5'
target: LOC_Os01g55650
miRNA: osa-miR1861n
miRNA: osa-miR1861n
mfe: -31.1 kcal/mol
p-value: 0.048105
position: 412
target 5' G C G G 3'
UCG GCUCCUGCUGC GGGU CG
AGU CGAGGACGGUG UCUA GC
miRNA 3' G U 5'
target: LOC_Os01g55650
miRNA: osa-miR2864
miRNA: osa-miR2864
mfe: -27.0 kcal/mol
p-value: 0.143560
position: 430
target 5' G G C 3'
UGC GGGGC GGGGCGGCGGG
ACG UUUUG UCCCGUCGUUU
miRNA 3' U U 5'
target: LOC_Os01g55650
miRNA: osa-miR444d
miRNA: osa-miR444d
mfe: -23.7 kcal/mol
p-value: 0.326082
position: 1795
target 5' G A 3'
AGCUU C AGAAGGCUGCAA
UUGAA G UCUUUCGGUGUU
miRNA 3' G C U 5'
target: LOC_Os01g55650
miRNA: osa-miR528
miRNA: osa-miR528
mfe: -31.8 kcal/mol
p-value: 0.036221
position: 1397
target 5' U U C 3'
UCCUUU CAUGCUCCUUUC
AGGAGA GUACGGGGAAGG
miRNA 3' G C U 5'
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