Basic information
Locus name	LOC_Os07g30970
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Others:Pathogenicity and stress
Effect for Senescence	Unclear
Gene Description	Nucleoside diphosphate kinase 1, putative, expressed
Evidence	Molecular evidence: SSH/Northern blot/RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process CTP biosynthetic process GTP biosynthetic process UTP biosynthetic process nucleoside diphosphate phosphorylation molecular function ATP binding nucleoside diphosphate kinase activity
Pathway	KEGG map00230 (EC 2.7.4.6) map00240 (EC 2.7.4.6) MetaCyc PWY-5687 PWY-6125 PWY-6126 PWY-6545
Sequence	LOC_Os07g30970.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os07g30970  miRNA: osa-miR1852 miRNA: osa-miR1852 mfe: -24.0 kcal/mol  p-value: 0.017232  position:  896  target 5' A      U           U   U 3'             ACCUGC GUUCUGGA CU UGU              UGGACG UAAGACUU GG AUA   miRNA  3'                 A  U     5'
Ortholog Group
Ortholog Groups: OG5_126708	Accession Taxon NP_192839 Arabidopsis thaliana NP_567346 Arabidopsis thaliana NP_567690 Arabidopsis thaliana NP_568970 Arabidopsis thaliana CMK060C Cyanidioschyzon merolae strain 10D CML110C Cyanidioschyzon merolae strain 10D 180172 Chlamydomonas reinhardtii 58944 Chlamydomonas reinhardtii ACO67933 Micromonas sp. RCC299 ACO70446 Micromonas sp. RCC299 NP_001056515 Oryza sativa Japonica Group NP_001059682 ( LOC_Os07g30970 ) Oryza sativa Japonica Group NP_001065404 Oryza sativa Japonica Group NP_001066971 Oryza sativa Japonica Group fgenesh1_pm.C_Chr_11.0001000051 Ostreococcus tauri fgenesh1_pm.C_Chr_15.0001000005 Ostreococcus tauri e_gw1.165.52.1 Physcomitrella patens subsp. patens e_gw1.5.149.1 Physcomitrella patens subsp. patens e_gw1.56.190.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_1650007 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1650001 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_15000012 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_276000003 Physcomitrella patens subsp. patens 29709.m001170 Ricinus communis 30147.m013795 Ricinus communis 30190.m010843 Ricinus communis 32353.m000039 Ricinus communis e_gw1.1.657.1 Thalassiosira pseudonana CCMP1335 fgenesh1_pg.C_chr_23000098 Thalassiosira pseudonana CCMP1335 fgenesh1_pg.C_chr_6000445 Thalassiosira pseudonana CCMP1335 XP_002952178 Volvox carteri f. nagariensis XP_002955131 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description Hamap MF_00451 33.7 1 138 IPR001564 Nucleoside diphosphate kinase PANTHER PTHR11349 4.0E-96 1 148 IPR001564 Nucleoside diphosphate kinase SMART SM00562 2.6E-83 1 137 IPR001564 Nucleoside diphosphate kinase SUPERFAMILY SSF54919 4.8E-58 1 148 IPR001564 Nucleoside diphosphate kinase Pfam PF00334 9.2E-55 2 133 IPR001564 Nucleoside diphosphate kinase PRINTS PR01243 1.1E-54 4 26 IPR001564 Nucleoside diphosphate kinase PRINTS PR01243 1.1E-54 48 67 IPR001564 Nucleoside diphosphate kinase PRINTS PR01243 1.1E-54 68 85 IPR001564 Nucleoside diphosphate kinase PRINTS PR01243 1.1E-54 89 105 IPR001564 Nucleoside diphosphate kinase PRINTS PR01243 1.1E-54 112 131 IPR001564 Nucleoside diphosphate kinase ProSitePatterns PS00469 NA 112 120 IPR023005 Nucleoside diphosphate kinase, active site