Basic information
Locus name	LOC_Os06g05880
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Others:Cytoskeleton organization
Effect for Senescence	Unclear
Gene Description	Profilin-2, putative, expressed
Evidence	Molecular evidence: SSH/Northern blot/RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process actin cytoskeleton organization molecular function actin binding
Sequence	LOC_Os06g05880.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os06g05880  miRNA: osa-miR1850 miRNA: osa-miR1850 mfe: -27.9 kcal/mol  p-value: 0.008584  position:  212  target 5' G G     C        C   C 3'             C CAGUC CCCAACUU CCG              G GUUAG GGGUUGAA GGU   miRNA  3' G G     A        A     5'  target: LOC_Os06g05880  miRNA: osa-miR2091-3p miRNA: osa-miR2091-3p mfe: -28.8 kcal/mol  p-value: 0.007131  position:  372  target 5' A    A          U      C 3'             GGGC CU GGAGGCA AUGUGU              UUCG GA CCUCCGU UACAUA   miRNA  3' G       U              C 5'
Ortholog Group
Ortholog Groups: OG5_127737	Accession Taxon NP_001119446 Arabidopsis thaliana NP_179566 Arabidopsis thaliana NP_179567 Arabidopsis thaliana NP_194663 Arabidopsis thaliana NP_194664 Arabidopsis thaliana NP_200471 Arabidopsis thaliana CMP220C Cyanidioschyzon merolae strain 10D 181887 Chlamydomonas reinhardtii ACO61463 Micromonas sp. RCC299 NP_001056833 ( LOC_Os06g05880 ) Oryza sativa Japonica Group NP_001064348 Oryza sativa Japonica Group NP_001064349 Oryza sativa Japonica Group estExt_Genewise1.C_270085 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_3280026 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_30140 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_27000015 Physcomitrella patens subsp. patens 29912.m005360 Ricinus communis 29912.m005361 Ricinus communis 30146.m003495 Ricinus communis XP_002954170 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PRINTS PR01640 2.5E-57 1 14 IPR005455 Profilin ProSitePatterns PS00414 NA 1 8 IPR027310 Profilin conserved site SMART SM00392 1.9E-61 1 131 IPR005455 Profilin PANTHER PTHR11604 1.9E-55 2 131 IPR005455 Profilin Pfam PF00235 7.9E-47 2 126 IPR005455 Profilin SUPERFAMILY SSF55770 8.2E-52 2 130 IPR005455 Profilin PRINTS PR00392 5.9E-54 3 12 IPR005455 Profilin PRINTS PR00392 5.9E-54 21 30 IPR005455 Profilin PRINTS PR01640 2.5E-57 27 40 IPR005455 Profilin PRINTS PR00392 5.9E-54 40 60 IPR005455 Profilin PRINTS PR01640 2.5E-57 52 66 IPR005455 Profilin PRINTS PR00392 5.9E-54 64 78 IPR005455 Profilin PRINTS PR01640 2.5E-57 71 80 IPR005455 Profilin PRINTS PR01640 2.5E-57 84 99 IPR005455 Profilin PRINTS PR00392 5.9E-54 100 113 IPR005455 Profilin PRINTS PR01640 2.5E-57 104 117 IPR005455 Profilin PRINTS PR00392 5.9E-54 113 130 IPR005455 Profilin PRINTS PR01640 2.5E-57 117 130 IPR005455 Profilin