Basic information
Locus name	LOC_Os01g15020
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Others:Flower development
Effect for Senescence	Unclear
Gene Description	WD-40 repeat family protein, putative, expressed
Evidence	Molecular evidence: SSH/Northern blot/RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	molecular function protein binding
Sequence	LOC_Os01g15020.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os01g15020  miRNA: osa-miR1428e-3p miRNA: osa-miR1428e-3p mfe: -21.4 kcal/mol  p-value: 0.099121  position:  2592  target 5' A                G    C 3'             CAAAUUC UGGUGUUG CUUG              GUUUAAG ACCGUAAU GAAU   miRNA  3'         U        A      5'  target: LOC_Os01g15020  miRNA: osa-miR160a miRNA: osa-miR160a mfe: -31.9 kcal/mol  p-value: 0.048796  position:  255  target 5' C             G   C  C 3'             GGCG GCGGGGGG CGG GC              CCGU UGUCCCUC GUC CG   miRNA  3' A    A        G      U 5'  target: LOC_Os01g15020  miRNA: osa-miR160b miRNA: osa-miR160b mfe: -31.9 kcal/mol  p-value: 0.049670  position:  255  target 5' C             G   C  C 3'             GGCG GCGGGGGG CGG GC              CCGU UGUCCCUC GUC CG   miRNA  3' A    A        G      U 5'  target: LOC_Os01g15020  miRNA: osa-miR160c miRNA: osa-miR160c mfe: -31.9 kcal/mol  p-value: 0.044485  position:  255  target 5' C             G   C  C 3'             GGCG GCGGGGGG CGG GC              CCGU UGUCCCUC GUC CG   miRNA  3' A    A        G      U 5'  target: LOC_Os01g15020  miRNA: osa-miR160d miRNA: osa-miR160d mfe: -31.9 kcal/mol  p-value: 0.048881  position:  255  target 5' C             G   C  C 3'             GGCG GCGGGGGG CGG GC              CCGU UGUCCCUC GUC CG   miRNA  3' A    A        G      U 5'  target: LOC_Os01g15020  miRNA: osa-miR160e miRNA: osa-miR160e mfe: -32.5 kcal/mol  p-value: 0.041966  position:  254  target 5' G              G   C  C 3'             CGGCG GCGGGGGG CGG GC              GCCGU UGUCCCUC GUC CG   miRNA  3'       A        G      U 5'  target: LOC_Os01g15020  miRNA: osa-miR171a miRNA: osa-miR171a mfe: -29.8 kcal/mol  p-value: 0.034165  position:  2021  target 5' U              G     U 3'             GGUGUUGGUGUGGU CAGUU              CUAUAACCGCGCCG GUUAG   miRNA  3'                A     U 5'  target: LOC_Os01g15020  miRNA: osa-miR1846a-3p miRNA: osa-miR1846a-3p mfe: -32.3 kcal/mol  p-value: 0.020497  position:  257  target 5' G               C C  U 3'             CGGCG GGGGGGCGG G CA              GCCGC CCUCUUGCC C GU   miRNA  3' G     U         C A    5'  target: LOC_Os01g15020  miRNA: osa-miR1846b-3p miRNA: osa-miR1846b-3p mfe: -32.3 kcal/mol  p-value: 0.027365  position:  257  target 5' G               C C  U 3'             CGGCG GGGGGGCGG G CA              GCCGC CCUCUUGCC C GU   miRNA  3' G     U         C A    5'  target: LOC_Os01g15020  miRNA: osa-miR1858a miRNA: osa-miR1858a mfe: -32.4 kcal/mol  p-value: 0.034514  position:  125  target 5' U   A  U        C      U 3'             UCC CA CUCCGUCU UCUCUC              GGG GU GAGGCAGG GGAGAG   miRNA  3' C               A        5'  target: LOC_Os01g15020  miRNA: osa-miR1858b miRNA: osa-miR1858b mfe: -32.4 kcal/mol  p-value: 0.032217  position:  125  target 5' U   A  U        C      U 3'             UCC CA CUCCGUCU UCUCUC              GGG GU GAGGCAGG GGAGAG   miRNA  3' C               A        5'  target: LOC_Os01g15020  miRNA: osa-miR2055 miRNA: osa-miR2055 mfe: -26.6 kcal/mol  p-value: 0.098246  position:  733  target 5' C     C       C      A 3'             GAACC CCUUUUC GGGAAA              UUUGG GGAAGGG UCCUUU   miRNA  3' C     U       U        5'  target: LOC_Os01g15020  miRNA: osa-miR439a miRNA: osa-miR439a mfe: -27.6 kcal/mol  p-value: 0.057930  position:  3494  target 5' G     U   U        G   U 3'             UCGAA CAA UUGCGGUU GGC              AGCUU GUU GGCGCCAA CUG   miRNA  3'                    G   U 5'  target: LOC_Os01g15020  miRNA: osa-miR439b miRNA: osa-miR439b mfe: -27.6 kcal/mol  p-value: 0.062300  position:  3494  target 5' G     U   U        G   U 3'             UCGAA CAA UUGCGGUU GGC              AGCUU GUU GGCGCCAA CUG   miRNA  3'                    G   U 5'  target: LOC_Os01g15020  miRNA: osa-miR439c miRNA: osa-miR439c mfe: -27.6 kcal/mol  p-value: 0.058167  position:  3494  target 5' G     U   U        G   U 3'             UCGAA CAA UUGCGGUU GGC              AGCUU GUU GGCGCCAA CUG   miRNA  3'                    G   U 5'  target: LOC_Os01g15020  miRNA: osa-miR439d miRNA: osa-miR439d mfe: -27.6 kcal/mol  p-value: 0.060022  position:  3494  target 5' G     U   U        G   U 3'             UCGAA CAA UUGCGGUU GGC              AGCUU GUU GGCGCCAA CUG   miRNA  3'                    G   U 5'  target: LOC_Os01g15020  miRNA: osa-miR439e miRNA: osa-miR439e mfe: -27.6 kcal/mol  p-value: 0.059821  position:  3494  target 5' G     U   U        G   U 3'             UCGAA CAA UUGCGGUU GGC              AGCUU GUU GGCGCCAA CUG   miRNA  3'                    G   U 5'  target: LOC_Os01g15020  miRNA: osa-miR439f miRNA: osa-miR439f mfe: -27.6 kcal/mol  p-value: 0.058982  position:  3494  target 5' G     U   U        G   U 3'             UCGAA CAA UUGCGGUU GGC              AGCUU GUU GGCGCCAA CUG   miRNA  3'                    G   U 5'  target: LOC_Os01g15020  miRNA: osa-miR439g miRNA: osa-miR439g mfe: -27.6 kcal/mol  p-value: 0.043454  position:  3494  target 5' G     U   U        G   U 3'             UCGAA CAA UUGCGGUU GGC              AGCUU GUU GGCGCCAA CUG   miRNA  3'                    G   U 5'  target: LOC_Os01g15020  miRNA: osa-miR439h miRNA: osa-miR439h mfe: -27.6 kcal/mol  p-value: 0.058531  position:  3494  target 5' G     U   U        G   U 3'             UCGAA CAA UUGCGGUU GGC              AGCUU GUU GGCGCCAA CUG   miRNA  3'                    G   U 5'  target: LOC_Os01g15020  miRNA: osa-miR439i miRNA: osa-miR439i mfe: -27.6 kcal/mol  p-value: 0.055294  position:  3494  target 5' G     U   U        G   U 3'             UCGAA CAA UUGCGGUU GGC              AGCUU GUU GGCGCCAA CUG   miRNA  3'                    G   U 5'  target: LOC_Os01g15020  miRNA: osa-miR439j miRNA: osa-miR439j mfe: -27.6 kcal/mol  p-value: 0.058659  position:  3494  target 5' G     U   U        G   U 3'             UCGAA CAA UUGCGGUU GGC              AGCUU GUU GGCGCCAA CUG   miRNA  3'                    G   U 5'  target: LOC_Os01g15020  miRNA: osa-miR444b miRNA: osa-miR444b mfe: -26.6 kcal/mol  p-value: 0.064582  position:  349  target 5' U                  G G 3'             GCA CAAGCUUGAG CAA A              CGU GUUCGAACUC GUU U   miRNA  3' C   C          U   G   5'  target: LOC_Os01g15020  miRNA: osa-miR444c miRNA: osa-miR444c mfe: -26.6 kcal/mol  p-value: 0.064715  position:  349  target 5' U                  G G 3'             GCA CAAGCUUGAG CAA A              CGU GUUCGAACUC GUU U   miRNA  3' C   C          U   G   5'
Ortholog Group
Ortholog Groups: OG5_136634	Accession Taxon NP_001031050 Arabidopsis thaliana NP_001031051 Arabidopsis thaliana NP_178164 Arabidopsis thaliana NP_188209 Arabidopsis thaliana NP_188306 Arabidopsis thaliana NP_198055 Arabidopsis thaliana NP_563981 Arabidopsis thaliana NP_849672 Arabidopsis thaliana NP_849913 Arabidopsis thaliana NP_851003 Arabidopsis thaliana NP_001042616 ( LOC_Os01g15020 ) Oryza sativa Japonica Group NP_001049587 Oryza sativa Japonica Group NP_001061055 Oryza sativa Japonica Group e_gw1.316.3.1 Physcomitrella patens subsp. patens estExt_fgenesh2_pm.C_990019 Physcomitrella patens subsp. patens 29841.m002924 Ricinus communis 29848.m004586 Ricinus communis 29848.m004589 Ricinus communis 29927.m000603 Ricinus communis 30073.m002232 Ricinus communis 30128.m008872 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description ProSiteProfiles PS50896 10.3 4 36 IPR006594 LisH dimerisation motif SMART SM00667 3.1E-5 4 36 IPR006594 LisH dimerisation motif ProSiteProfiles PS50897 14.0 34 92 IPR006595 CTLH, C-terminal LisH motif SMART SM00668 2.1E-15 34 92 IPR006595 CTLH, C-terminal LisH motif PANTHER PTHR22847 0.0 95 1113 No hit NA SUPERFAMILY SSF50978 3.8E-9 323 427 IPR017986 WD40-repeat-containing domain SMART SM00320 0.0 329 368 IPR001680 WD40 repeat ProSiteProfiles PS50082 9.3 335 377 IPR001680 WD40 repeat ProSiteProfiles PS50294 16.1 335 618 IPR017986 WD40-repeat-containing domain Pfam PF00400 0.1 340 368 IPR001680 WD40 repeat SMART SM00320 40.0 389 428 IPR001680 WD40 repeat SUPERFAMILY SSF50978 1.6E-47 400 617 IPR017986 WD40-repeat-containing domain SMART SM00320 2.6E-6 434 475 IPR001680 WD40 repeat Pfam PF00400 1.3E-6 439 475 IPR001680 WD40 repeat ProSiteProfiles PS50082 10.4 441 476 IPR001680 WD40 repeat ProSitePatterns PS00678 NA 462 476 IPR019775 WD40 repeat, conserved site SMART SM00320 0.0 477 518 IPR001680 WD40 repeat Pfam PF00400 2.8E-5 479 517 IPR001680 WD40 repeat SMART SM00320 140.0 521 564 IPR001680 WD40 repeat SMART SM00320 0.0 567 609 IPR001680 WD40 repeat ProSiteProfiles PS50082 11.1 577 618 IPR001680 WD40 repeat ProSitePatterns PS00678 NA 596 610 IPR019775 WD40 repeat, conserved site SMART SM00320 80.0 821 858 IPR001680 WD40 repeat SUPERFAMILY SSF50978 1.6E-47 826 946 IPR017986 WD40-repeat-containing domain SMART SM00320 2.2 861 901 IPR001680 WD40 repeat ProSiteProfiles PS50294 14.3 868 952 IPR017986 WD40-repeat-containing domain SMART SM00320 1.0E-4 904 943 IPR001680 WD40 repeat Pfam PF00400 1.2E-5 906 942 IPR001680 WD40 repeat ProSiteProfiles PS50082 12.3 911 952 IPR001680 WD40 repeat SUPERFAMILY SSF50998 4.3E-9 964 1089 IPR011047 Quinonprotein alcohol dehydrogenase-like superfamily SMART SM00320 9.1 993 1035 IPR001680 WD40 repeat SMART SM00320 200.0 1058 1090 IPR001680 WD40 repeat