Basic information
Locus name	LOC_Os06g11330
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Others:Flower development
Effect for Senescence	Unclear
Gene Description	SRF-type transcription factor family protein, expressed
Evidence	Molecular evidence: SSH/Northern blot/RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	molecular function DNA binding protein dimerization activity
Pathway	Reactome REACT_21303
Sequence	LOC_Os06g11330.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os06g11330  miRNA: osa-miR529a miRNA: osa-miR529a mfe: -25.6 kcal/mol  p-value: 0.024068  position:  130  target 5' C        G     A A     A 3'             GAGGGAGA GAGGG G UACGG              CUUCUUCU CUCUC C AUGUC   miRNA  3'                  C       5'
Ortholog Group
Ortholog Groups: OG5_242769	Accession Taxon NP_001048193 Oryza sativa Japonica Group NP_001057149 ( LOC_Os06g11330 ) Oryza sativa Japonica Group
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11945 2.2E-70 1 171 No hit NA ProSiteProfiles PS50066 28.1 1 61 IPR002100 Transcription factor, MADS-box SMART SM00432 9.9E-35 1 60 IPR002100 Transcription factor, MADS-box PRINTS PR00404 8.5E-24 3 23 IPR002100 Transcription factor, MADS-box ProSitePatterns PS00350 NA 3 57 IPR002100 Transcription factor, MADS-box SUPERFAMILY SSF55455 3.5E-29 3 74 IPR002100 Transcription factor, MADS-box Pfam PF00319 2.5E-23 10 59 IPR002100 Transcription factor, MADS-box PRINTS PR00404 8.5E-24 23 38 IPR002100 Transcription factor, MADS-box PRINTS PR00404 8.5E-24 38 59 IPR002100 Transcription factor, MADS-box Pfam PF01486 1.7E-14 86 171 IPR002487 Transcription factor, K-box ProSiteProfiles PS51297 13.4 87 177 IPR002487 Transcription factor, K-box Coils Coil NA 94 115 No hit NA Coils Coil NA 150 171 No hit NA