Basic information
Locus name	LOC_Os12g29520
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Hormone response pathway:Auxin
Effect for Senescence	Unclear
Gene Description	Auxin response factor 2, putative, expressed
Evidence	Molecular evidence: SSH/Northern blot/RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process regulation of transcription, DNA-dependent cellular component nucleus molecular function DNA binding
Sequence	LOC_Os12g29520.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os12g29520  miRNA: osa-miR1858a miRNA: osa-miR1858a mfe: -31.8 kcal/mol  p-value: 0.036756  position:  135  target 5' C       A          C   C 3'             GCCUU C UCGUCCUCCU CUC              CGGGG G GGCAGGAGGA GAG   miRNA  3'       U A                5'  target: LOC_Os12g29520  miRNA: osa-miR1858b miRNA: osa-miR1858b mfe: -31.8 kcal/mol  p-value: 0.033984  position:  135  target 5' C       A          C   C 3'             GCCUU C UCGUCCUCCU CUC              CGGGG G GGCAGGAGGA GAG   miRNA  3'       U A                5'  target: LOC_Os12g29520  miRNA: osa-miR2094-5p miRNA: osa-miR2094-5p mfe: -31.2 kcal/mol  p-value: 0.073466  position:  3451  target 5' A      U        U      G 3'             CACCUG GGAGCCUG G AGCU              GUGGGU CCUCGGAU C UCGG   miRNA  3'                   G    U 5'  target: LOC_Os12g29520  miRNA: osa-miR2097-3p miRNA: osa-miR2097-3p mfe: -24.6 kcal/mol  p-value: 0.188092  position:  2324  target 5' A         U         U   U 3'             GGAUGC AC UGAAGAGGA GAA              UUUACG UG GCUUCUUCU CUU   miRNA  3'        C  U               5'  target: LOC_Os12g29520  miRNA: osa-miR395f miRNA: osa-miR395f mfe: -26.4 kcal/mol  p-value: 0.082310  position:  280  target 5' C                   G 3'             AGUU CUCCGAGCGAUUCG              UCAA GGGGUUUGUUAAGU   miRNA  3' C    G              G 5'  target: LOC_Os12g29520  miRNA: osa-miR414 miRNA: osa-miR414 mfe: -30.6 kcal/mol  p-value: 0.002568  position:  393  target 5' C             G    G   A 3'             GGCGGUGGUGGUG AGGA UGG              CUGCUACUACUAC UCCU ACU   miRNA  3' C                        5'  target: LOC_Os12g29520  miRNA: osa-miR444d miRNA: osa-miR444d mfe: -30.9 kcal/mol  p-value: 0.015843  position:  2474  target 5' G  G           U      G 3'             AA UUGCAAGAAGG CCACAA              UU AACGUUCUUUC GGUGUU   miRNA  3' G  G                    5'  target: LOC_Os12g29520  miRNA: osa-miR529a miRNA: osa-miR529a mfe: -26.7 kcal/mol  p-value: 0.046700  position:  297  target 5' C             A    G  G 3'             GGGGAAGGGGGAG GG A AG              CUUCUUCUCUCUC CC U UC   miRNA  3'                  A G    5'  target: LOC_Os12g29520  miRNA: osa-miR529a miRNA: osa-miR529a mfe: -28.5 kcal/mol  p-value: 0.022796  position:  48  target 5' C             A A      A 3'             GGAGAAGAGAGAG G G ACGG              CUUCUUCUCUCUC C C UGUC   miRNA  3'                   A      5'  target: LOC_Os12g29520  miRNA: osa-miR531b miRNA: osa-miR531b mfe: -33.0 kcal/mol  p-value: 0.095789  position:  352  target 5' A               C   U 3'             CGGCG GCGGCCUCG CGG              GCCGU CGUCGGGGC GCU   miRNA  3'       G         C   C 5'
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31384 6.0E-256 4 840 No hit NA SUPERFAMILY SSF101936 2.9E-41 141 277 IPR015300 DNA-binding pseudobarrel domain Pfam PF02362 8.8E-23 148 249 IPR003340 B3 DNA binding domain ProSiteProfiles PS50863 11.9 148 250 IPR003340 B3 DNA binding domain SMART SM01019 9.8E-24 148 250 IPR003340 B3 DNA binding domain Pfam PF06507 9.4E-33 274 356 IPR010525 Auxin response factor Pfam PF02309 4.1E-30 698 803 IPR003311 AUX/IAA protein ProSiteProfiles PS50962 27.8 714 796 IPR011525 Aux/IAA-ARF-dimerisation SUPERFAMILY SSF54277 5.9E-12 715 789 No hit NA