Basic information
Locus name	LOC_Os10g39130
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Others:Flower development
Effect for Senescence	Unclear
Gene Description	Agamous-like MADS box protein AGL19, putative, expressed
Evidence	Molecular evidence: SSH/Northern blot/RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	molecular function DNA binding protein dimerization activity
Pathway	Reactome REACT_21303
Sequence	LOC_Os10g39130.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os10g39130  miRNA: osa-miR2118c miRNA: osa-miR2118c mfe: -28.4 kcal/mol  p-value: 0.022974  position:  438  target 5' G        C     G   C  C 3'             AGGAGUAG GGGUA CGG GG              UCCUUAUC UCCGU GCC CU   miRNA  3' A        C     A      U 5'  target: LOC_Os10g39130  miRNA: osa-miR2118q miRNA: osa-miR2118q mfe: -28.4 kcal/mol  p-value: 0.019809  position:  438  target 5' G        C     G   C  C 3'             AGGAGUAG GGGUA CGG GG              UCCUUAUC UCCGU GCC CU   miRNA  3' A        C     A      U 5'  target: LOC_Os10g39130  miRNA: osa-miR529a miRNA: osa-miR529a mfe: -29.9 kcal/mol  p-value: 0.005374  position:  428  target 5' C             A  A    G 3'             GAGGAGGGGGAGG GU GCGG              UUCUUCUCUCUCC CA UGUC   miRNA  3' C                       5'  target: LOC_Os10g39130  miRNA: osa-miR531b miRNA: osa-miR531b mfe: -38.9 kcal/mol  p-value: 0.004482  position:  1334  target 5' A            U       U 3'             GGCAUGCAGUUC CGGUGGG              CCGUGCGUCGGG GCCGCUC   miRNA  3' G                      5'
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11945 3.7E-71 1 170 No hit NA ProSiteProfiles PS50066 31.3 1 61 IPR002100 Transcription factor, MADS-box SMART SM00432 4.1E-39 1 60 IPR002100 Transcription factor, MADS-box PRINTS PR00404 1.2E-30 3 23 IPR002100 Transcription factor, MADS-box ProSitePatterns PS00350 NA 3 57 IPR002100 Transcription factor, MADS-box SUPERFAMILY SSF55455 2.1E-31 3 85 IPR002100 Transcription factor, MADS-box Pfam PF00319 2.3E-27 9 59 IPR002100 Transcription factor, MADS-box PRINTS PR00404 1.2E-30 23 38 IPR002100 Transcription factor, MADS-box PRINTS PR00404 1.2E-30 38 59 IPR002100 Transcription factor, MADS-box Pfam PF01486 6.3E-17 79 171 IPR002487 Transcription factor, K-box ProSiteProfiles PS51297 13.5 87 177 IPR002487 Transcription factor, K-box Coils Coil NA 143 171 No hit NA