Basic information
Locus name	LOC_Os07g38730
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Others:Flower development
Effect for Senescence	unclear
Gene Description	Tubulin alpha-1 chain, putative, expressed
Evidence	Molecular evidence: SSH/Northern blot/RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process microtubule-based process cellular component microtubule molecular function GTP binding
Pathway	Reactome REACT_152
Sequence	LOC_Os07g38730.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_126605	Accession Taxon NP_171974 Arabidopsis thaliana NP_175423 Arabidopsis thaliana NP_176654 Arabidopsis thaliana NP_193232 Arabidopsis thaliana NP_197478 Arabidopsis thaliana NP_197479 Arabidopsis thaliana NP_849388 Arabidopsis thaliana CMT504C Cyanidioschyzon merolae strain 10D 128523 Chlamydomonas reinhardtii 186023 Chlamydomonas reinhardtii NP_113413 Guillardia theta ACO67325 Micromonas sp. RCC299 ACO69268 Micromonas sp. RCC299 NP_001049400 Oryza sativa Japonica Group NP_001051132 Oryza sativa Japonica Group NP_001060075 ( LOC_Os07g38730 ) Oryza sativa Japonica Group NP_001067613 Oryza sativa Japonica Group estExt_fgenesh1_pm.C_Chr_12.00010025 Ostreococcus tauri fgenesh1_pm.C_Chr_08.0001000046 Ostreococcus tauri e_gw1.11.3.1 Physcomitrella patens subsp. patens e_gw1.131.6.1 Physcomitrella patens subsp. patens e_gw1.215.113.1 Physcomitrella patens subsp. patens e_gw1.48.5.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_3410014 Physcomitrella patens subsp. patens estExt_Genewise1.C_3410020 Physcomitrella patens subsp. patens estExt_Genewise1.C_700139 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_2150009 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_335000037 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_5000108 Physcomitrella patens subsp. patens 29822.m003495 Ricinus communis 29950.m001120 Ricinus communis 30084.m000186 Ricinus communis 30099.m001691 Ricinus communis 30170.m013630 Ricinus communis estExt_Genewise1.C_chr_90079 Thalassiosira pseudonana CCMP1335 XP_002951007 Volvox carteri f. nagariensis XP_002957217 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11588 0.0 1 450 IPR000217 Tubulin ProSitePatterns PS00228 NA 1 4 IPR013838 Beta tubulin, autoregulation binding site SUPERFAMILY SSF52490 1.4E-97 1 244 IPR003008 Tubulin/FtsZ, GTPase domain Pfam PF00091 8.4E-70 3 225 IPR003008 Tubulin/FtsZ, GTPase domain PRINTS PR01161 1.1E-91 10 30 IPR000217 Tubulin PRINTS PR01162 1.2E-118 18 33 IPR002452 Alpha tubulin PRINTS PR01162 1.2E-118 45 58 IPR002452 Alpha tubulin SMART SM00864 2.3E-71 49 246 IPR003008 Tubulin/FtsZ, GTPase domain PRINTS PR01161 1.1E-91 53 72 IPR000217 Tubulin PRINTS PR01162 1.2E-118 88 101 IPR002452 Alpha tubulin PRINTS PR01161 1.1E-91 95 106 IPR000217 Tubulin PRINTS PR01161 1.1E-91 108 132 IPR000217 Tubulin PRINTS PR01162 1.2E-118 120 128 IPR002452 Alpha tubulin PRINTS PR01161 1.1E-91 134 152 IPR000217 Tubulin ProSitePatterns PS00227 NA 142 148 IPR017975 Tubulin, conserved site PRINTS PR01162 1.2E-118 148 160 IPR002452 Alpha tubulin PRINTS PR01161 1.1E-91 153 174 IPR000217 Tubulin PRINTS PR01162 1.2E-118 161 172 IPR002452 Alpha tubulin PRINTS PR01161 1.1E-91 178 191 IPR000217 Tubulin PRINTS PR01161 1.1E-91 192 212 IPR000217 Tubulin PRINTS PR01162 1.2E-118 214 226 IPR002452 Alpha tubulin SUPERFAMILY SSF55307 2.7E-85 246 435 IPR008280 Tubulin/FtsZ, C-terminal SMART SM00865 6.8E-54 248 393 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Pfam PF03953 2.6E-51 263 393 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain PRINTS PR01162 1.2E-118 274 289 IPR002452 Alpha tubulin PRINTS PR01162 1.2E-118 321 342 IPR002452 Alpha tubulin PRINTS PR01162 1.2E-118 347 360 IPR002452 Alpha tubulin PRINTS PR01162 1.2E-118 360 379 IPR002452 Alpha tubulin PRINTS PR01161 1.1E-91 380 408 IPR000217 Tubulin PRINTS PR01162 1.2E-118 385 401 IPR002452 Alpha tubulin Coils Coil NA 418 439 No hit NA PRINTS PR01162 1.2E-118 422 438 IPR002452 Alpha tubulin