Basic information
Locus name	LOC_Os06g42490
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Others:Unknown
Effect for Senescence	Unclear
Gene Description	Expressed protein
Evidence	Molecular evidence:SSH [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process transcription, DNA-dependent cellular component nucleus molecular function DNA binding
Sequence	LOC_Os06g42490.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os06g42490  miRNA: osa-miR2093-5p miRNA: osa-miR2093-5p mfe: -20.7 kcal/mol  p-value: 0.067626  position:  377  target 5' A  G          G A A     A 3'             GU UCUUCCAGUU A A UGCAC              CA AGAAGGUUAA U U ACGUG   miRNA  3' A                         5'  target: LOC_Os06g42490  miRNA: osa-miR2095-3p miRNA: osa-miR2095-3p mfe: -25.9 kcal/mol  p-value: 0.002629  position:  480  target 5' A    U               A 3'             GUGC UUGUCAUAAAUGGAG              UAUG AAUAGUAUUUACCUU   miRNA  3'                      C 5'  target: LOC_Os06g42490  miRNA: osa-miR2101-3p miRNA: osa-miR2101-3p mfe: -23.5 kcal/mol  p-value: 0.029697  position:  1822  target 5' G         U      C      G 3'             GCAAUGCUC GUUUGA UUGAAU              UGUUACGAG UGAACU AAUUUA   miRNA  3'                  C        5'  target: LOC_Os06g42490  miRNA: osa-miR444f miRNA: osa-miR444f mfe: -26.7 kcal/mol  p-value: 0.084351  position:  633  target 5' G    C           U    U 3'             AAGU UGAGGUGAUGG CUGC              UUCG ACUCCGUUGUU GACG   miRNA  3'      A                U 5'
Ortholog Group
Ortholog Groups: OG5_190434	Accession Taxon NP_194151 Arabidopsis thaliana NP_001058124 ( LOC_Os06g42490 ) Oryza sativa Japonica Group 30170.m014205 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF47676 2.6E-9 60 148 IPR017923 Transcription factor IIS, N-terminal ProSiteProfiles PS51319 15.9 72 151 IPR017923 Transcription factor IIS, N-terminal