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Locus name | AT5G45900 |
Alias | APG7 |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Nutrient recycling:Autophagy |
Effect for Senescence | delay |
Gene Description | Component of autophagy conjugation pathway. Required for proper senescence. |
Evidence | Genetic evidence:Mutant [Ref 1]; Genomic evidence:microarray data [Ref 2] |
References | 1: Doelling JH, Walker JM, Friedman EM, Thompson AR, Vierstra RDThe APG8/12-activating enzyme APG7 is required for proper nutrient recycling and senescence in Arabidopsis thaliana.J. Biol. Chem. 2002 Sep 6;277(36):33105-142: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
Gene Ontology | |
Sequence | AT5G45900.1 | Genomic | mRNA | CDS | Protein
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Mutant name |
apg7-1 |
Mutant/Transgenic |
mutant |
Ecotype |
Ws |
Mutagenesis type |
T-DNA insertion_knock out |
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Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) |
Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
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Details | | target: AT5G45900.1 miRNA: ath-miR779 miRNA: ath-miR779 mfe: -22.4 kcal/mol p-value: 0.034600
position: 139 target 5' C A U 3' GUCGACG AGGUUUCUGG CA CAGUUGC UUUAAAGGUU GU miRNA 3' U A 5'
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Ortholog Group | |
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Ortholog Groups: OG5_128264 | |
Cross Link | |
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Mutant Image | |
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atg7 (SALK_057606C) mutant exhibited early senescence phenotype compared with wild type Col-0 (7-week-old). | |
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Localization | cytosol |
Evidence | SUBAcon |
Pubmed ID | 23180787 |