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Locus name | AT4G02380 |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Others:defense |
Effect for Senescence | unclear |
Gene Description | Similar to small stress-induced proteins |
Evidence | Molecular evidence:cDNA library [Ref 1] |
References | 1: Y.GUO, Z.CAI, S.GAN.Transcriptome of Arabidopsis leaf senescence.Plant, Cell & Environment 2004, 27(5):521-549. |
Gene Ontology | |
Sequence | AT4G02380.1 | Genomic | mRNA | CDS | Protein AT4G02380.2 | Genomic | mRNA | CDS | Protein
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miRNA Interaction | |
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Details | | target: AT4G02380.1 miRNA: ath-miR2936 miRNA: ath-miR2936 mfe: -32.3 kcal/mol p-value: 0.000238
position: 150 target 5' A U U A 3' GUCUGU UUCUCUCU UUCAAG CAGACA AAGAGAGA GAGUUC miRNA 3' G C 5'
target: AT4G02380.1 miRNA: ath-miR847 miRNA: ath-miR847 mfe: -27.3 kcal/mol p-value: 0.004060
position: 340 target 5' G G A 3' AU AAGAAGAAGG GAGUGG UA UUCUUCUUCU CUCACU miRNA 3' G G C 5'
target: AT4G02380.2 miRNA: ath-miR2936 miRNA: ath-miR2936 mfe: -32.3 kcal/mol p-value: 0.000160
position: 146 target 5' A U U A 3' GUCUGU UUCUCUCU UUCAAG CAGACA AAGAGAGA GAGUUC miRNA 3' G C 5'
target: AT4G02380.2 miRNA: ath-miR847 miRNA: ath-miR847 mfe: -27.3 kcal/mol p-value: 0.002956
position: 340 target 5' G G A 3' AU AAGAAGAAGG GAGUGG UA UUCUUCUUCU CUCACU miRNA 3' G G C 5'
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Ortholog Group | |
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Ortholog Groups: OG5_164305 | |
Cross Link | |
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Database | Entry ID | E-value | Start | End | InterPro ID | Description | Pfam | PF03242 | 4.6E-38 | 1 | 94 | IPR004926 | Late embryogenesis abundant protein, LEA-5 |
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