Basic information
Locus name	AT3G02470
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:Metabolism
Effect for Senescence	unclear
Gene Description	S-adenosylmethionine decarboxylase
Evidence	Molecular evidence: cDNA library [Ref 1]
References	1: Y.GUO, Z.CAI, S.GAN. Transcriptome of Arabidopsis leaf senescence. Plant, Cell & Environment 2004, 27(5):521-549.
Gene Ontology	biological process spermidine biosynthetic process spermine biosynthetic process molecular function adenosylmethionine decarboxylase activity
Pathway	KEGG map00270 (EC 4.1.1.50) map00330 (EC 4.1.1.50)
Sequence	AT3G02470.1 | Genomic | mRNA | CDS | Protein AT3G02470.3 | Genomic | mRNA | CDS | Protein AT3G02470.4 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT3G02470.1  miRNA: ath-miR867 miRNA: ath-miR867 mfe: -22.0 kcal/mol  p-value: 0.043764  position:  1726  target 5' C               U     G 3'             UUCCUAAU AACUAU UUCGA              AAGGAUUA UUGGUA AAGUU   miRNA  3'          U      C       5'  target: AT3G02470.3  miRNA: ath-miR867 miRNA: ath-miR867 mfe: -22.0 kcal/mol  p-value: 0.039715  position:  1644  target 5' C               U     G 3'             UUCCUAAU AACUAU UUCGA              AAGGAUUA UUGGUA AAGUU   miRNA  3'          U      C       5'  target: AT3G02470.4  miRNA: ath-miR867 miRNA: ath-miR867 mfe: -22.0 kcal/mol  p-value: 0.040636  position:  1706  target 5' C               U     G 3'             UUCCUAAU AACUAU UUCGA              AAGGAUUA UUGGUA AAGUU   miRNA  3'          U      C       5'
Ortholog Group
Ortholog Groups: OG5_128279	Accession Taxon NP_001031888 Arabidopsis thaliana NP_001078093 Arabidopsis thaliana NP_001154585 ( AT3G02470 ) Arabidopsis thaliana NP_186896 Arabidopsis thaliana NP_189184 Arabidopsis thaliana NP_197099 Arabidopsis thaliana NP_197394 Arabidopsis thaliana CMO012C Cyanidioschyzon merolae strain 10D 183928 Chlamydomonas reinhardtii NP_001047404 Oryza sativa Japonica Group NP_001053213 Oryza sativa Japonica Group NP_001063217 Oryza sativa Japonica Group fgenesh1_pm.C_Chr_13.0001000010 Ostreococcus tauri e_gw1.29.159.1 Physcomitrella patens subsp. patens e_gw1.29.160.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_3350015 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1870015 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2060057 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2060061 Physcomitrella patens subsp. patens 27772.m000038 Ricinus communis 29673.m000902 Ricinus communis 29726.m003938 Ricinus communis 30138.m003848 Ricinus communis e_gw1.5.248.1 Thalassiosira pseudonana CCMP1335 XP_002957689 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF001355 1.2E-121 1 342 IPR018167 S-adenosylmethionine decarboxylase subgroup PANTHER PTHR11570 4.5E-145 4 352 IPR001985 S-adenosylmethionine decarboxylase Pfam PF01536 9.1E-139 4 334 IPR001985 S-adenosylmethionine decarboxylase TIGRFAM TIGR00535 3.1E-124 8 334 IPR018167 S-adenosylmethionine decarboxylase subgroup SUPERFAMILY SSF56276 7.3E-119 11 332 IPR016067 S-adenosylmethionine decarboxylase, core ProSitePatterns PS01336 NA 63 73 IPR018166 S-adenosylmethionine decarboxylase, conserved site