Basic information
Locus name	AT1G65540
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:unknown
Effect for Senescence	unclear
Gene Description	hypothetical protein
Evidence	Molecular evidence:cDNA library [Ref 1]
References	1: Y.GUO, Z.CAI, S.GAN. Transcriptome of Arabidopsis leaf senescence. Plant, Cell & Environment 2004, 27(5):521-549.
Gene Ontology	molecular function calcium ion binding
Sequence	AT1G65540.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT1G65540.1  miRNA: ath-miR159b miRNA: ath-miR159b mfe: -24.9 kcal/mol  p-value: 0.065049  position:  1567  target 5' A      C G      G     A 3'             AAGAGU U CUUCAA CCAAA              UUCUCG G GAAGUU GGUUU   miRNA  3'        A G      A       5'  target: AT1G65540.1  miRNA: ath-miR776 miRNA: ath-miR776 mfe: -23.7 kcal/mol  p-value: 0.028707  position:  2123  target 5' A    C               U 3'             AAUA UGGUGGAAGACUUAG              UUGU GUUAUCUUCUGAAUC   miRNA  3'      A               U 5'  target: AT1G65540.1  miRNA: ath-miR858 miRNA: ath-miR858 mfe: -27.1 kcal/mol  p-value: 0.017375  position:  1798  target 5' A     G U             A 3'             AAGGU G ACAGAUGAUGAGG              UUCCA C UGUCUGUUGCUUU   miRNA  3'       G U               5'
Ortholog Group
Ortholog Groups: OG5_128198	Accession Taxon NP_001030897 Arabidopsis thaliana NP_176732 ( AT1G65540 ) Arabidopsis thaliana NP_191541 Arabidopsis thaliana CMN072C Cyanidioschyzon merolae strain 10D 179211 Chlamydomonas reinhardtii ACO64597 Micromonas sp. RCC299 NP_001047387 Oryza sativa Japonica Group NP_001053202 Oryza sativa Japonica Group gw1.08.00.195.1 Ostreococcus tauri e_gw1.156.49.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1230054 Physcomitrella patens subsp. patens 29678.m000507 Ricinus communis 29929.m004507 Ricinus communis e_gw1.2.306.1 Thalassiosira pseudonana CCMP1335 XP_002955585 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR14009 8.7E-233 136 726 No hit NA Pfam PF07766 1.5E-108 181 450 IPR011685 LETM1-like Coils Coil NA 494 530 No hit NA SUPERFAMILY SSF47473 3.4E-9 579 613 No hit NA Coils Coil NA 637 658 No hit NA ProSiteProfiles PS50222 10.1 653 688 IPR002048 EF-hand domain SUPERFAMILY SSF47473 3.4E-9 662 722 No hit NA ProSiteProfiles PS50222 9.3 689 724 IPR002048 EF-hand domain Coils Coil NA 707 728 No hit NA
Subcellular Localization
Localization	mitochondrion
Evidence	SUBAcon
Pubmed ID	23180787