Basic information
Locus name	AT2G01740
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:unknown
Effect for Senescence	unclear
Gene Description	hypothetical protein
Evidence	Molecular evidence:cDNA library [Ref 1]
References	1: Y.GUO, Z.CAI, S.GAN. Transcriptome of Arabidopsis leaf senescence. Plant, Cell & Environment 2004, 27(5):521-549.
Sequence	AT2G01740.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT2G01740.1  miRNA: ath-miR161 miRNA: ath-miR161 mfe: -26.8 kcal/mol  p-value: 0.007865  position:  583  target 5' U    A A              C 3'             CUCC A UGUGGUUACUUUCA              GGGG U ACAUCAGUGAAAGU   miRNA  3' U    C                  5'  target: AT2G01740.1  miRNA: ath-miR869 miRNA: ath-miR869 mfe: -24.9 kcal/mol  p-value: 0.018766  position:  779  target 5' U   G A              A 3'             CGA G UAGAGUUGAGCCAA              GUU U GUCUUAACUUGGUU   miRNA  3'     G G              A 5'
Ortholog Group
Ortholog Groups: OG5_212161	Accession Taxon NP_178283 ( AT2G01740 ) Arabidopsis thaliana 29673.m000946 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24015 1.4E-156 1 540 No hit NA ProSiteProfiles PS51375 6.1 20 54 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 9.8 55 89 IPR002885 Pentatricopeptide repeat Pfam PF13041 3.5E-11 58 103 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 6.5E-6 58 91 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 9.6 90 120 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 4.8E-5 92 120 IPR002885 Pentatricopeptide repeat Pfam PF13041 1.1E-10 127 175 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 7.5 128 158 IPR002885 Pentatricopeptide repeat SUPERFAMILY SSF48452 1.2E-7 129 396 No hit NA ProSiteProfiles PS51375 11.3 162 196 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 1.6E-5 164 198 IPR002885 Pentatricopeptide repeat Pfam PF13041 2.3E-18 196 245 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 12.2 197 231 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 9.3E-10 199 232 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 13.5 232 266 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 3.5E-10 234 267 IPR002885 Pentatricopeptide repeat Pfam PF13041 1.2E-9 266 314 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 10.3 267 301 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 3.0E-5 270 302 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 11.7 302 336 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 2.3E-6 305 337 IPR002885 Pentatricopeptide repeat Pfam PF13041 2.4E-12 336 385 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 12.0 337 371 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 4.3E-9 339 373 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 5.5 372 396 IPR002885 Pentatricopeptide repeat Pfam PF13041 6.4E-11 402 450 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 11.8 402 436 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 4.5E-8 404 437 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 9.9 437 471 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 6.8E-6 440 472 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 12.2 472 506 IPR002885 Pentatricopeptide repeat Pfam PF13041 3.9E-9 474 518 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 5.9E-9 475 508 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 9.6 507 541 IPR002885 Pentatricopeptide repeat