Basic information
Locus name	GSMUA_Achr3G13670_001
Organism	Banana (Musa acuminata)
Taxonomic identifier	[NCBI]
Function category	Cell wall metabolism
Effect for Senescence	Unclear
Gene Description	Probable polygalacturonase At1g80170
Evidence	Molecular evidence:RNA sequencing [Ref 1]
References	1: D'Hont A, Denoeud F, Aury JM, Baurens FC, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M, Da Silva C, Jabbari K, Cardi C, Poulain J, Souquet M, Labadie K, Jourda C, Lengelle J, Rodier-Goud M, Alberti A, Bernard M, Correa M, Ayyampalayam S, Mckain The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature 2012 Aug 9;488(7410):213-7
Gene Ontology	biological process carbohydrate metabolic process molecular function polygalacturonase activity
Sequence	GSMUA_Achr3T13670_001 | Genomic | mRNA | CDS | Protein
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF51126 9.4E-121 57 439 IPR011050 Pectin lyase fold/virulence factor PANTHER PTHR31375 1.7E-174 62 451 No hit NA Pfam PF00295 3.5E-103 91 418 IPR000743 Glycoside hydrolase, family 28 SMART SM00710 1,100.0 196 245 IPR006626 Parallel beta-helix repeat SMART SM00710 490.0 246 267 IPR006626 Parallel beta-helix repeat SMART SM00710 1,800.0 269 289 IPR006626 Parallel beta-helix repeat ProSitePatterns PS00502 NA 276 289 IPR000743 Glycoside hydrolase, family 28 SMART SM00710 5.9 299 320 IPR006626 Parallel beta-helix repeat SMART SM00710 2,900.0 328 349 IPR006626 Parallel beta-helix repeat