Basic information
Locus name	AT3G57680
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:unclear
Effect for Senescence	unclear
Gene Description	peptidase S41 family protein
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process proteolysis molecular function protein binding serine-type peptidase activity
Sequence	AT3G57680.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_130275	Accession Taxon NP_191327 ( AT3G57680 ) Arabidopsis thaliana NP_193509 Arabidopsis thaliana NP_849401 Arabidopsis thaliana CMP297C Cyanidioschyzon merolae strain 10D CMT227C Cyanidioschyzon merolae strain 10D 196882 Chlamydomonas reinhardtii 96534 Chlamydomonas reinhardtii ACO63313 Micromonas sp. RCC299 NP_001048505 Oryza sativa Japonica Group NP_001057504 Oryza sativa Japonica Group fgenesh1_pg.C_Chr_01.0001000046 Ostreococcus tauri e_gw1.155.13.1 Physcomitrella patens subsp. patens e_gw1.199.56.1 Physcomitrella patens subsp. patens 27810.m000652 Ricinus communis 29904.m003051 Ricinus communis fgenesh1_pg.C_chr_7000332 Thalassiosira pseudonana CCMP1335 thaps1_ua_kg.chr_14000091 Thalassiosira pseudonana CCMP1335 XP_002948230 Volvox carteri f. nagariensis XP_002951533 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR32060 3.0E-210 3 510 No hit NA SUPERFAMILY SSF52096 2.3E-62 117 215 No hit NA TIGRFAM TIGR00225 1.3E-87 155 484 IPR004447 C-terminal-processing peptidase S41A SUPERFAMILY SSF50156 5.7E-17 166 295 IPR001478 PDZ domain ProSiteProfiles PS50106 10.7 183 253 IPR001478 PDZ domain Pfam PF00595 2.3E-8 193 263 IPR001478 PDZ domain SMART SM00228 2.4E-12 195 268 IPR001478 PDZ domain SMART SM00245 6.8E-68 274 471 IPR005151 Interphotoreceptor retinol-binding SUPERFAMILY SSF52096 2.3E-62 298 471 No hit NA Pfam PF03572 8.5E-57 307 469 IPR005151 Interphotoreceptor retinol-binding
Subcellular Localization
Localization	plastid
Evidence	SUBAcon
Pubmed ID	23180787