Basic information
Locus name	AT4G12610
Alias	RAP74
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:AP2-EREBP
Effect for Senescence	unclear
Gene Description	RAP74; FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding, transcription activator activity, transcription initiation factor activity, catalytic activity.
Evidence	Molecular evidence:cDNA library [Ref 1]
References	1: Y.GUO, Z.CAI, S.GAN. Transcriptome of Arabidopsis leaf senescence. Plant, Cell & Environment 2004, 27(5):521-549.
Gene Ontology	biological process positive regulation of transcription, DNA-dependent transcription initiation from RNA polymerase II promoter cellular component nucleus molecular function DNA binding catalytic activity
Pathway	Reactome REACT_1675 REACT_1788 REACT_1892 REACT_6185 REACT_71 REACT_769
Sequence	AT4G12610.1 | Genomic | mRNA | CDS | Protein AT4G12610.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT4G12610.1  miRNA: ath-miR413 miRNA: ath-miR413 mfe: -23.9 kcal/mol  p-value: 0.070130  position:  314  target 5' A    C              A 3'             UGCA AACGGGAGAAGUUA              ACGU UUGUUCUCUUUGAU   miRNA  3' C    C              A 5'  target: AT4G12610.2  miRNA: ath-miR413 miRNA: ath-miR413 mfe: -23.9 kcal/mol  p-value: 0.073053  position:  314  target 5' A    C              A 3'             UGCA AACGGGAGAAGUUA              ACGU UUGUUCUCUUUGAU   miRNA  3' C    C              A 5'
Ortholog Group
Ortholog Groups: OG5_132372	Accession Taxon NP_001154225 ( AT4G12610 ) Arabidopsis thaliana NP_192998 Arabidopsis thaliana ACO63488 Micromonas sp. RCC299 NP_001064266 Oryza sativa Japonica Group gw1.1.514.1 Physcomitrella patens subsp. patens 29745.m000371 Ricinus communis 30063.m001429 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR13011 7.4E-142 1 543 No hit NA Pfam PF05793 7.9E-174 47 542 IPR008851 Transcription initiation factor IIF, alpha subunit SUPERFAMILY SSF50916 1.5E-37 53 181 IPR011039 Transcription Factor IIF, Rap30/Rap74, interaction SUPERFAMILY SSF46785 1.9E-19 473 542 No hit NA
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787