Basic information
Locus name	AT5G11210
Alias	GLR2.5
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:unclear
Effect for Senescence	unclear
Gene Description	member of Putative ligand-gated ion channel subunit family.GLUTAMATE RECEPTOR 2.5 (GLR2.5)
Evidence	Molecular evidence:cDNA library [Ref 1]
References	1: Y.GUO, Z.CAI, S.GAN. Transcriptome of Arabidopsis leaf senescence. Plant, Cell & Environment 2004, 27(5):521-549.
Gene Ontology	biological process G-protein coupled receptor signaling pathway cellular component integral to membrane molecular function G-protein coupled receptor activity ionotropic glutamate receptor activity
Pathway	Reactome REACT_14797
Sequence	AT5G11210.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT5G11210.1  miRNA: ath-miR397a miRNA: ath-miR397a mfe: -30.5 kcal/mol  p-value: 0.002549  position:  1989  target 5' G                    G 3'             AUUGAUGCUGCGUUCGAUGA              UAGUUGCGACGUGAGUUACU   miRNA  3' G                      5'  target: AT5G11210.1  miRNA: ath-miR397b miRNA: ath-miR397b mfe: -23.9 kcal/mol  p-value: 0.057121  position:  1989  target 5' G       C            G 3'             AUUGAUG UGCGUUCGAUGA              UAGUUGC ACGUGAGUUACU   miRNA  3' G       U              5'  target: AT5G11210.1  miRNA: ath-miR865-3p miRNA: ath-miR865-3p mfe: -27.6 kcal/mol  p-value: 0.001699  position:  1828  target 5' A                    C 3'             UGGAU GAUUUGAGGAAGAG              ACCUA UUAAACUCCUUUUU   miRNA  3' A     U                5'
Ortholog Group
Ortholog Groups: OG5_137248	Accession Taxon NP_180047 Arabidopsis thaliana NP_180048 Arabidopsis thaliana NP_180474 Arabidopsis thaliana NP_180475 Arabidopsis thaliana NP_180476 Arabidopsis thaliana NP_194899 Arabidopsis thaliana NP_196679 Arabidopsis thaliana NP_196682 ( AT5G11210 ) Arabidopsis thaliana NP_198062 Arabidopsis thaliana NP_001048343 Oryza sativa Japonica Group NP_001063234 Oryza sativa Japonica Group NP_001063236 Oryza sativa Japonica Group NP_001063237 Oryza sativa Japonica Group 29848.m004483 Ricinus communis 29848.m004485 Ricinus communis 29848.m004488 Ricinus communis 29848.m004489 Ricinus communis 30131.m007169 Ricinus communis 30131.m007170 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF037090 0.0 1 827 IPR017103 Ionotropic glutamate receptor, plant Pfam PF01094 1.9E-48 22 325 IPR001828 Extracellular ligand-binding receptor SUPERFAMILY SSF53822 1.4E-60 23 366 No hit NA PANTHER PTHR18966 0.0 24 801 No hit NA PRINTS PR00248 3.9E-5 31 57 IPR000337 GPCR, family 3 PRINTS PR00248 3.9E-5 63 82 IPR000337 GPCR, family 3 PRINTS PR00248 3.9E-5 82 98 IPR000337 GPCR, family 3 SUPERFAMILY SSF53850 1.6E-51 362 515 No hit NA SMART SM00079 3.7E-35 383 734 IPR001320 Ionotropic glutamate receptor Pfam PF00497 1.6E-19 411 733 IPR001638 Extracellular solute-binding protein, family 3 Pfam PF00060 7.2E-29 511 764 IPR001320 Ionotropic glutamate receptor SUPERFAMILY SSF53850 1.6E-51 619 734 No hit NA
Subcellular Localization
Localization	plasma membrane
Evidence	SUBAcon
Pubmed ID	23180787