Basic information
Locus name	AT1G19220
Alias	ARF19
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Hormone response pathway:Auxin
Effect for Senescence	promote
Gene Description	Encodes an auxin response factor 19.
Evidence	Genetic evidence:Mutant [Ref 1]
References	1: Ellis CM, Nagpal P, Young JC, Hagen G, Guilfoyle TJ, Reed JW AUXIN RESPONSE FACTOR1 and AUXIN RESPONSE FACTOR2 regulate senescence and floral organ abscission in Arabidopsis thaliana. Development 2005 Oct;132(20):4563-74
Gene Ontology	biological process regulation of transcription, DNA-dependent cellular component nucleus molecular function DNA binding
Sequence	AT1G19220.1 | Genomic | mRNA | CDS | Protein
Mutant information
Mutant name	arf2-8 nph4-1 arf19-4
Mutant/Transgenic	mutant
Ecotype	Col-0
Mutagenesis type	cross
miRNA Interaction
Details	target: AT1G19220.1  miRNA: ath-miR778 miRNA: ath-miR778 mfe: -25.5 kcal/mol  p-value: 0.043868  position:  1331  target 5' A C  G G             A 3'             G UG A AUAGGCCAAGCCG              C AC U UAUUUGGUUCGGU   miRNA  3' G C  A G               5'  target: AT1G19220.1  miRNA: ath-miR834 miRNA: ath-miR834 mfe: -28.1 kcal/mol  p-value: 0.028759  position:  1909  target 5' G   G            A    A 3'             UAC AUUGCUGUUGCU ACCA              AUG UGGCGAUGACGA UGGU   miRNA  3' A   G                   5'
Ortholog Group
Ortholog Groups: OG5_144184	Accession Taxon NP_173356 ( AT1G19220 ) Arabidopsis thaliana NP_568400 Arabidopsis thaliana NP_851046 Arabidopsis thaliana NP_851047 Arabidopsis thaliana NP_001045857 Oryza sativa Japonica Group NP_001057054 Oryza sativa Japonica Group NP_001058492 Oryza sativa Japonica Group NP_001062268 Oryza sativa Japonica Group 29739.m003713 Ricinus communis 30185.m000956 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31384 2.9E-256 1 1085 No hit NA SUPERFAMILY SSF101936 3.4E-44 116 255 IPR015300 DNA-binding pseudobarrel domain Pfam PF02362 6.6E-22 126 227 IPR003340 B3 DNA binding domain ProSiteProfiles PS50863 12.5 126 228 IPR003340 B3 DNA binding domain SMART SM01019 1.0E-24 126 228 IPR003340 B3 DNA binding domain Pfam PF06507 7.3E-35 252 334 IPR010525 Auxin response factor Coils Coil NA 495 519 No hit NA Pfam PF02309 8.2E-24 953 1047 IPR003311 AUX/IAA protein ProSiteProfiles PS50962 28.6 959 1041 IPR011525 Aux/IAA-ARF-dimerisation SUPERFAMILY SSF54277 1.2E-8 972 1036 No hit NA
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787