Basic information
Locus name	AT2G45660
Alias	SOC1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	flowering time
Effect for Senescence	delay
Gene Description	SUPPRESSOR OF OVEREXPRESSION OF CO 1.SOC1 inhibits Chl degradation via negatively regulating PPH expression
Evidence	Genetic evidence:Mutant [Ref 1]
References	1: Chen J, Zhu X, Ren J, Qiu K, Li Z, Xie Z, Gao J, Zhou X, Kuai B. Suppressor of Overexpression of CO 1 Negatively Regulates Dark-Induced Leaf Degreening and Senescence by Directly Repressing Pheophytinase and Other Senescence-Associated Genes in Arabidopsis. Plant Physiol. 2017 Mar;173(3):1881-1891. doi: 10.1104/pp.16.01457. Epub 2017 Jan 17.
Gene Ontology	molecular function DNA binding protein dimerization activity
Pathway	Reactome REACT_21303
Sequence	AT2G45660.1 | mRNA | CDS | Protein AT2G45660.2 | mRNA | CDS | Protein
Mutant information
Mutated 1 Mutant name soc1-6 (SALK_138131C) Mutant/Transgenic mutant Ecotype Col-0 Mutagenesis type T-DNA
Mutated 2 Mutant name soc1-6 pph-1 Mutant/Transgenic mutant Ecotype Col-0 Mutagenesis type cross
Mutated 3 Mutant name soc1-6 (SALK_138131C) Mutant/Transgenic Ecotype Col-0 Mutagenesis type T-DNA
Ortholog Group
Ortholog Groups: OG5_190130	Accession Taxon NP_182090 ( AT2G45660 ) Arabidopsis thaliana NP_001048801 Oryza sativa Japonica Group NP_001065168 Oryza sativa Japonica Group
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11945 2.6E-79 1 178 No hit NA ProSiteProfiles PS50066 31.7 1 61 IPR002100 Transcription factor, MADS-box SMART SM00432 3.8E-41 1 60 IPR002100 Transcription factor, MADS-box PRINTS PR00404 8.0E-31 3 23 IPR002100 Transcription factor, MADS-box ProSitePatterns PS00350 NA 3 57 IPR002100 Transcription factor, MADS-box SUPERFAMILY SSF55455 1.0E-33 3 83 IPR002100 Transcription factor, MADS-box Pfam PF00319 6.0E-28 9 59 IPR002100 Transcription factor, MADS-box PRINTS PR00404 8.0E-31 23 38 IPR002100 Transcription factor, MADS-box PRINTS PR00404 8.0E-31 38 59 IPR002100 Transcription factor, MADS-box Pfam PF01486 1.4E-27 77 171 IPR002487 Transcription factor, K-box Coils Coil NA 87 115 No hit NA ProSiteProfiles PS51297 15.7 87 177 IPR002487 Transcription factor, K-box Coils Coil NA 121 142 No hit NA Coils Coil NA 143 171 No hit NA
Mutant Image
both attached and detached leaves of soc1-6 showed accelerated yellowing phenotypes
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787