Basic information
GenBank ID	AK069031
Alias	TDC1
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Redox regulation
Effect for Senescence	delay
Gene Description	tryptophan decarboxylase (TDC)
Evidence	Genetic evidence:Transgene [Ref 1]
References	1: Kang K, Kim YS, Park S, Back K Senescence-induced serotonin biosynthesis and its role in delaying senescence in rice leaves. Plant Physiol. 2009 Jul;150(3):1380-93
Gene Ontology	biological process cellular amino acid metabolic process molecular function carboxy-lyase activity
Sequence	AK069031.1 | mRNA | CDS | Protein
Mutant information
Mutated 1 Mutant name OsTDC1OE Mutant/Transgenic transgenic Ecotype Rice (Oryza sativa) Mutagenesis type transgene
Mutated 2 Mutant name OsTDC1_RNAi Mutant/Transgenic transgenic Ecotype Rice (Oryza sativa) Mutagenesis type RNAi
miRNA Interaction
Details	target: AK069031  miRNA: osa-miR1848 miRNA: osa-miR1848 mfe: -34.6 kcal/mol  p-value: 0.058825  position:  689  target 5' C     A  C           C  A 3'             GCGCG CG CGCGCU GCGG GG              CGUGC GC GCGCGG CGCU CC   miRNA  3' A               C         5'
Ortholog Group
Ortholog Groups: OG5_127644	Accession Taxon CMP107C Cyanidioschyzon merolae strain 10D ACO63342 Micromonas sp. RCC299 NP_001060968 ( AK069031 ) Oryza sativa Japonica Group NP_001060969 Oryza sativa Japonica Group e_gw1.02.00.140.1 Ostreococcus tauri 28725.m000309 Ricinus communis gw1.22.51.1 Thalassiosira pseudonana CCMP1335
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11999 1.1E-253 13 514 No hit NA SUPERFAMILY SSF53383 1.0E-131 26 511 IPR015424 Pyridoxal phosphate-dependent transferase PRINTS PR00800 6.5E-56 30 49 IPR010977 Aromatic-L-amino-acid decarboxylase PRINTS PR00800 6.5E-56 53 70 IPR010977 Aromatic-L-amino-acid decarboxylase Pfam PF00282 2.6E-128 59 440 IPR002129 Pyridoxal phosphate-dependent decarboxylase PRINTS PR00800 6.5E-56 71 90 IPR010977 Aromatic-L-amino-acid decarboxylase PRINTS PR00800 6.5E-56 97 116 IPR010977 Aromatic-L-amino-acid decarboxylase PRINTS PR00800 6.5E-56 118 136 IPR010977 Aromatic-L-amino-acid decarboxylase PRINTS PR00800 6.5E-56 167 187 IPR010977 Aromatic-L-amino-acid decarboxylase ProSitePatterns PS00392 NA 323 344 IPR021115 Pyridoxal-phosphate binding site PRINTS PR00800 6.5E-56 379 394 IPR010977 Aromatic-L-amino-acid decarboxylase PRINTS PR00800 6.5E-56 422 441 IPR010977 Aromatic-L-amino-acid decarboxylase Coils Coil NA 447 468 No hit NA