Basic information
Locus name	AT3G56860
Alias	UBA2a
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:defense
Effect for Senescence	promote
Gene Description	wound-responsive RNA-binding protein
Evidence	Genetic evidence:Transgene [Ref 1]
References	1: Kim CY, Bove J, Assmann SM Overexpression of wound-responsive RNA-binding proteins induces leaf senescence and hypersensitive-like cell death. New Phytol. 2008;180(1):57-70
Gene Ontology	molecular function nucleic acid binding
Sequence	AT3G56860.1 | Genomic | mRNA | CDS | Protein AT3G56860.2 | Genomic | mRNA | CDS | Protein AT3G56860.3 | Genomic | mRNA | CDS | Protein
Mutant information
Mutated 1 Mutant name 2x35S-UBA2a-OX Mutant/Transgenic transgenic Ecotype Col-0 Mutagenesis type transgene
Mutated 2 Mutant name DEX-UBA2a-OX Mutant/Transgenic transgenic Ecotype Col-0 Mutagenesis type transgene
miRNA Interaction
Details	target: AT3G56860.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -31.0 kcal/mol  p-value: 0.000629  position:  288  target 5' A               A    G 3'             GAUGAUGGUGAUGAG AUGA              CUGCUACUACUACUU UACU   miRNA  3' A               C      5'  target: AT3G56860.1  miRNA: ath-miR781 miRNA: ath-miR781 mfe: -23.2 kcal/mol  p-value: 0.072860  position:  929  target 5' A       A              A 3'             UAAGUAU CUGGGAGAC CUAA              AUUCAUA GGUCUUUUG GAUU   miRNA  3'                   A      5'  target: AT3G56860.2  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -31.0 kcal/mol  p-value: 0.000475  position:  288  target 5' A               A    G 3'             GAUGAUGGUGAUGAG AUGA              CUGCUACUACUACUU UACU   miRNA  3' A               C      5'  target: AT3G56860.2  miRNA: ath-miR781 miRNA: ath-miR781 mfe: -23.2 kcal/mol  p-value: 0.059541  position:  929  target 5' A       A              A 3'             UAAGUAU CUGGGAGAC CUAA              AUUCAUA GGUCUUUUG GAUU   miRNA  3'                   A      5'  target: AT3G56860.3  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -31.0 kcal/mol  p-value: 0.000675  position:  288  target 5' A               A    G 3'             GAUGAUGGUGAUGAG AUGA              CUGCUACUACUACUU UACU   miRNA  3' A               C      5'  target: AT3G56860.3  miRNA: ath-miR781 miRNA: ath-miR781 mfe: -23.2 kcal/mol  p-value: 0.076600  position:  929  target 5' A       A              A 3'             UAAGUAU CUGGGAGAC CUAA              AUUCAUA GGUCUUUUG GAUU   miRNA  3'                   A      5'
Ortholog Group
Ortholog Groups: OG5_133793	Accession Taxon NP_001078035 Arabidopsis thaliana NP_181639 Arabidopsis thaliana NP_188119 Arabidopsis thaliana NP_567042 Arabidopsis thaliana NP_850710 ( AT3G56860 ) Arabidopsis thaliana NP_850711 Arabidopsis thaliana NP_974317 Arabidopsis thaliana NP_001042672 Oryza sativa Japonica Group NP_001043567 Oryza sativa Japonica Group NP_001054022 Oryza sativa Japonica Group gw1.188.84.1 Physcomitrella patens subsp. patens gw1.59.258.1 Physcomitrella patens subsp. patens gw1.70.172.1 Physcomitrella patens subsp. patens 29900.m001607 Ricinus communis 30006.m000276 Ricinus communis 30099.m001684 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24011 7.3E-292 1 476 No hit NA Coils Coil NA 34 55 No hit NA Coils Coil NA 115 136 No hit NA SUPERFAMILY SSF54928 2.8E-21 139 220 No hit NA ProSiteProfiles PS50102 14.0 140 217 IPR000504 RNA recognition motif domain SMART SM00360 7.2E-19 141 213 IPR000504 RNA recognition motif domain Pfam PF00076 9.9E-15 142 208 IPR000504 RNA recognition motif domain SUPERFAMILY SSF54928 9.0E-21 234 351 No hit NA ProSiteProfiles PS50102 12.3 245 321 IPR000504 RNA recognition motif domain SMART SM00360 2.1E-15 246 318 IPR000504 RNA recognition motif domain Pfam PF00076 8.1E-12 247 315 IPR000504 RNA recognition motif domain
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787