Basic information
Locus name	AT3G15010
Alias	UBA2c
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:defense
Effect for Senescence	promote
Gene Description	wound-responsive RNA-binding protein
Evidence	Genetic evidence:Transgene [Ref 1]
References	1: Kim CY, Bove J, Assmann SM Overexpression of wound-responsive RNA-binding proteins induces leaf senescence and hypersensitive-like cell death. New Phytol. 2008;180(1):57-70
Gene Ontology	molecular function nucleic acid binding
Sequence	AT3G15010.1 | Genomic | mRNA | CDS | Protein AT3G15010.2 | Genomic | mRNA | CDS | Protein
Mutant information
Mutant name	DEX-UBA2c-OX
Mutant/Transgenic	transgenic
Ecotype	Col-0
Mutagenesis type	transgene
miRNA Interaction
Details	target: AT3G15010.2  miRNA: ath-miR172a miRNA: ath-miR172a mfe: -27.3 kcal/mol  p-value: 0.011305  position:  1372  target 5' U    U         U     A 3'             GUGU GCAUUAUCA GAUUC              UACG CGUAGUAGU CUAAG   miRNA  3'      U         U     A 5'  target: AT3G15010.2  miRNA: ath-miR172b miRNA: ath-miR172b mfe: -27.3 kcal/mol  p-value: 0.011070  position:  1372  target 5' U    U         U     A 3'             GUGU GCAUUAUCA GAUUC              UACG CGUAGUAGU CUAAG   miRNA  3'      U         U     A 5'  target: AT3G15010.2  miRNA: ath-miR172c miRNA: ath-miR172c mfe: -26.7 kcal/mol  p-value: 0.015466  position:  1373  target 5' G   U         U     A 3'             UGU GCAUUAUCA GAUUC              ACG CGUAGUAGU CUAAG   miRNA  3' G   U         U     A 5'  target: AT3G15010.2  miRNA: ath-miR172d miRNA: ath-miR172d mfe: -26.7 kcal/mol  p-value: 0.016235  position:  1373  target 5' G   U         U     A 3'             UGU GCAUUAUCA GAUUC              ACG CGUAGUAGU CUAAG   miRNA  3' G   U         U     A 5'  target: AT3G15010.2  miRNA: ath-miR172e miRNA: ath-miR172e mfe: -27.1 kcal/mol  p-value: 0.012931  position:  1372  target 5' U    U         U     A 3'             GUGU GCAUUAUCA GAUUC              UACG CGUAGUAGU CUAAG   miRNA  3'      U         U     G 5'
Ortholog Group
Ortholog Groups: OG5_133793	Accession Taxon NP_001078035 Arabidopsis thaliana NP_181639 Arabidopsis thaliana NP_188119 Arabidopsis thaliana NP_567042 Arabidopsis thaliana NP_850710 Arabidopsis thaliana NP_850711 Arabidopsis thaliana NP_974317 ( AT3G15010 ) Arabidopsis thaliana NP_001042672 Oryza sativa Japonica Group NP_001043567 Oryza sativa Japonica Group NP_001054022 Oryza sativa Japonica Group gw1.188.84.1 Physcomitrella patens subsp. patens gw1.59.258.1 Physcomitrella patens subsp. patens gw1.70.172.1 Physcomitrella patens subsp. patens 29900.m001607 Ricinus communis 30006.m000276 Ricinus communis 30099.m001684 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24011 1.8E-246 1 404 No hit NA SUPERFAMILY SSF54928 7.3E-22 66 155 No hit NA ProSiteProfiles PS50102 15.3 75 152 IPR000504 RNA recognition motif domain SMART SM00360 1.5E-19 76 148 IPR000504 RNA recognition motif domain Pfam PF00076 3.5E-15 77 144 IPR000504 RNA recognition motif domain SUPERFAMILY SSF54928 2.3E-18 162 265 No hit NA ProSiteProfiles PS50102 13.1 167 248 IPR000504 RNA recognition motif domain SMART SM00360 6.3E-13 168 240 IPR000504 RNA recognition motif domain Pfam PF14259 3.2E-10 169 238 No hit NA
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787