Basic information
Locus name	AT5G06960
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:bZIP
Effect for Senescence	unclear
Gene Description	bZIP family transcription factor (OBF5)
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function sequence-specific DNA binding transcription factor activity sequence-specific DNA binding
Sequence	AT5G06960.1 | Genomic | mRNA | CDS | Protein AT5G06960.2 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_138072	Accession Taxon NP_001030678 Arabidopsis thaliana NP_001031845 Arabidopsis thaliana NP_001078141 Arabidopsis thaliana NP_001078539 Arabidopsis thaliana NP_196312 Arabidopsis thaliana NP_196313 Arabidopsis thaliana NP_566415 Arabidopsis thaliana NP_974292 Arabidopsis thaliana NP_974293 Arabidopsis thaliana NP_974744 Arabidopsis thaliana NP_974745 ( AT5G06960 ) Arabidopsis thaliana NP_001049945 Oryza sativa Japonica Group NP_001060695 Oryza sativa Japonica Group e_gw1.258.57.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1260170 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_30000177 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_257000017 Physcomitrella patens subsp. patens 30131.m007163 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR22952 7.1E-216 30 330 No hit NA SMART SM00338 1.9E-7 42 105 IPR004827 Basic-leucine zipper domain ProSiteProfiles PS50217 9.4 44 88 IPR004827 Basic-leucine zipper domain Pfam PF00170 1.9E-7 45 86 IPR004827 Basic-leucine zipper domain SUPERFAMILY SSF57959 5.6E-7 46 89 No hit NA ProSitePatterns PS00036 NA 49 64 IPR004827 Basic-leucine zipper domain Coils Coil NA 65 93 No hit NA Pfam PF14144 1.0E-32 127 205 IPR025422 DOG1 domain Coils Coil NA 217 238 No hit NA
Mutant Image
normal leaf senescence
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787