Leaf Senescence DataBase

Basic information

Locus name

AT1G30500

Alias

NF-YA7

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Transcription regulation:CCAAT

Effect for Senescence

unclear

Gene Description

CCAAT-binding transcription factor (CBF-B/NF-YA) family protein

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

2: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

biological process	regulation of transcription, DNA-dependent
molecular function	sequence-specific DNA binding transcription factor activity

Sequence

Microarray

Sampling

Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)

Comparation

Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.

miRNA Interaction

Details

target: AT1G30500.1
miRNA: ath-miR854a
miRNA: ath-miR854a
mfe: -29.0 kcal/mol
p-value: 0.006613

position:  8
target 5' U   G   U        U       U 3'
           CUC CUC CUCUCUGU CUUCAUU
           GAG GAG GAGGGAUA GGAGUAG
miRNA  3'                            5'

target: AT1G30500.1
miRNA: ath-miR854b
miRNA: ath-miR854b
mfe: -29.0 kcal/mol
p-value: 0.008051

position:  8
target 5' U   G   U        U       U 3'
           CUC CUC CUCUCUGU CUUCAUU
           GAG GAG GAGGGAUA GGAGUAG
miRNA  3'                            5'

target: AT1G30500.1
miRNA: ath-miR854c
miRNA: ath-miR854c
mfe: -29.0 kcal/mol
p-value: 0.006666

position:  8
target 5' U   G   U        U       U 3'
           CUC CUC CUCUCUGU CUUCAUU
           GAG GAG GAGGGAUA GGAGUAG
miRNA  3'                            5'

target: AT1G30500.1
miRNA: ath-miR854d
miRNA: ath-miR854d
mfe: -29.0 kcal/mol
p-value: 0.006883

position:  8
target 5' U   G   U        U       U 3'
           CUC CUC CUCUCUGU CUUCAUU
           GAG GAG GAGGGAUA GGAGUAG
miRNA  3'                            5'

target: AT1G30500.1
miRNA: ath-miR854e
miRNA: ath-miR854e
mfe: -29.0 kcal/mol
p-value: 0.008216

position:  8
target 5' U   G   U        U       U 3'
           CUC CUC CUCUCUGU CUUCAUU
           GAG GAG GAGGGAUA GGAGUAG
miRNA  3'                            5'

target: AT1G30500.2
miRNA: ath-miR854a
miRNA: ath-miR854a
mfe: -29.0 kcal/mol
p-value: 0.006767

position:  10
target 5' U   G   U        U       U 3'
           CUC CUC CUCUCUGU CUUCAUU
           GAG GAG GAGGGAUA GGAGUAG
miRNA  3'                            5'

target: AT1G30500.2
miRNA: ath-miR854b
miRNA: ath-miR854b
mfe: -29.0 kcal/mol
p-value: 0.008211

position:  10
target 5' U   G   U        U       U 3'
           CUC CUC CUCUCUGU CUUCAUU
           GAG GAG GAGGGAUA GGAGUAG
miRNA  3'                            5'

target: AT1G30500.2
miRNA: ath-miR854c
miRNA: ath-miR854c
mfe: -29.0 kcal/mol
p-value: 0.006818

position:  10
target 5' U   G   U        U       U 3'
           CUC CUC CUCUCUGU CUUCAUU
           GAG GAG GAGGGAUA GGAGUAG
miRNA  3'                            5'

target: AT1G30500.2
miRNA: ath-miR854d
miRNA: ath-miR854d
mfe: -29.0 kcal/mol
p-value: 0.007049

position:  10
target 5' U   G   U        U       U 3'
           CUC CUC CUCUCUGU CUUCAUU
           GAG GAG GAGGGAUA GGAGUAG
miRNA  3'                            5'

target: AT1G30500.2
miRNA: ath-miR854e
miRNA: ath-miR854e
mfe: -29.0 kcal/mol
p-value: 0.008384

position:  10
target 5' U   G   U        U       U 3'
           CUC CUC CUCUCUGU CUUCAUU
           GAG GAG GAGGGAUA GGAGUAG
miRNA  3'                            5'

Ortholog Group

Ortholog Groups: OG5_129105

Accession	Taxon
NP_174338	Arabidopsis thaliana
NP_566670	Arabidopsis thaliana
NP_849733 ( AT1G30500 )	Arabidopsis thaliana
NP_850235	Arabidopsis thaliana
ACO66786	Micromonas sp. RCC299
NP_001061187	Oryza sativa Japonica Group
NP_001067261	Oryza sativa Japonica Group
1400010035	Ostreococcus tauri
estExt_fgenesh1_pg.C_420118	Physcomitrella patens subsp. patens
29864.m001503	Ricinus communis
29912.m005288	Ricinus communis
30075.m001182	Ricinus communis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR12632	6.9E-61	30	174	IPR001289	CCAAT-binding transcription factor, subunit B
SMART	SM00521	1.8E-37	93	154	IPR001289	CCAAT-binding transcription factor, subunit B
ProSiteProfiles	PS51152	38.4	94	154	IPR001289	CCAAT-binding transcription factor, subunit B
Pfam	PF02045	7.1E-31	95	151	IPR001289	CCAAT-binding transcription factor, subunit B
PRINTS	PR00616	7.1E-24	97	119	IPR001289	CCAAT-binding transcription factor, subunit B
PRINTS	PR00616	7.1E-24	128	151	IPR001289	CCAAT-binding transcription factor, subunit B

Mutant Image

CS67015. pNF-YA7:GUS(promoter_reporter)

Subcellular Localization

Localization

nucleus

Evidence

SUBAcon

Pubmed ID

23180787