Basic information
Locus name	AT3G14020
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:CCAAT
Effect for Senescence	unclear
Gene Description	CCAAT-binding transcription factor (CBF-B/NF-YA) family protein
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function sequence-specific DNA binding transcription factor activity
Sequence	AT3G14020.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_142871	Accession Taxon NP_001031272 Arabidopsis thaliana NP_173202 Arabidopsis thaliana NP_175818 Arabidopsis thaliana NP_188018 ( AT3G14020 ) Arabidopsis thaliana NP_565049 Arabidopsis thaliana NP_973850 Arabidopsis thaliana NP_973851 Arabidopsis thaliana NP_974134 Arabidopsis thaliana NP_001049132 Oryza sativa Japonica Group NP_001050347 Oryza sativa Japonica Group NP_001060240 Oryza sativa Japonica Group 29706.m001307 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR12632 1.1E-73 1 308 IPR001289 CCAAT-binding transcription factor, subunit B SMART SM00521 1.0E-35 168 229 IPR001289 CCAAT-binding transcription factor, subunit B ProSiteProfiles PS51152 36.3 169 229 IPR001289 CCAAT-binding transcription factor, subunit B Pfam PF02045 3.1E-29 170 226 IPR001289 CCAAT-binding transcription factor, subunit B PRINTS PR00616 3.2E-22 172 194 IPR001289 CCAAT-binding transcription factor, subunit B ProSitePatterns PS00686 NA 174 194 IPR018362 CCAAT-binding factor, conserved site PRINTS PR00616 3.2E-22 203 226 IPR001289 CCAAT-binding transcription factor, subunit B
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787