Basic information
Locus name	AT3G05690
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:CCAAT
Effect for Senescence	unclear
Gene Description	CCAAT-binding transcription factor (CBF-B/NF-YA) family protein
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function sequence-specific DNA binding transcription factor activity
Sequence	AT3G05690.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT3G05690.1  miRNA: ath-miR169d miRNA: ath-miR169d mfe: -37.5 kcal/mol  p-value: 0.000140  position:  1184  target 5' A     A              U 3'             GGCAA UCAUCUUUGGCUCA              CCGUU AGUAGGAACCGAGU   miRNA  3' G     C                5'  target: AT3G05690.1  miRNA: ath-miR169e miRNA: ath-miR169e mfe: -37.5 kcal/mol  p-value: 0.000059  position:  1184  target 5' A     A              U 3'             GGCAA UCAUCUUUGGCUCA              CCGUU AGUAGGAACCGAGU   miRNA  3' G     C                5'  target: AT3G05690.1  miRNA: ath-miR169f miRNA: ath-miR169f mfe: -37.5 kcal/mol  p-value: 0.000060  position:  1184  target 5' A     A              U 3'             GGCAA UCAUCUUUGGCUCA              CCGUU AGUAGGAACCGAGU   miRNA  3' G     C                5'  target: AT3G05690.1  miRNA: ath-miR169g miRNA: ath-miR169g mfe: -37.5 kcal/mol  p-value: 0.000077  position:  1184  target 5' A     A              U 3'             GGCAA UCAUCUUUGGCUCA              CCGUU AGUAGGAACCGAGU   miRNA  3' G     C                5'  target: AT3G05690.1  miRNA: ath-miR169h miRNA: ath-miR169h mfe: -35.5 kcal/mol  p-value: 0.000614  position:  1182  target 5' A       A            C 3'             CAGGCAA UCAUCUUUGGCU              GUCCGUU AGUAGGAACCGA   miRNA  3'         C            U 5'  target: AT3G05690.1  miRNA: ath-miR169i miRNA: ath-miR169i mfe: -35.5 kcal/mol  p-value: 0.000282  position:  1182  target 5' A       A            C 3'             CAGGCAA UCAUCUUUGGCU              GUCCGUU AGUAGGAACCGA   miRNA  3'         C            U 5'  target: AT3G05690.1  miRNA: ath-miR169j miRNA: ath-miR169j mfe: -35.5 kcal/mol  p-value: 0.000406  position:  1182  target 5' A       A            C 3'             CAGGCAA UCAUCUUUGGCU              GUCCGUU AGUAGGAACCGA   miRNA  3'         C            U 5'  target: AT3G05690.1  miRNA: ath-miR169k miRNA: ath-miR169k mfe: -35.5 kcal/mol  p-value: 0.000395  position:  1182  target 5' A       A            C 3'             CAGGCAA UCAUCUUUGGCU              GUCCGUU AGUAGGAACCGA   miRNA  3'         C            U 5'  target: AT3G05690.1  miRNA: ath-miR169l miRNA: ath-miR169l mfe: -35.5 kcal/mol  p-value: 0.000425  position:  1182  target 5' A       A            C 3'             CAGGCAA UCAUCUUUGGCU              GUCCGUU AGUAGGAACCGA   miRNA  3'         C            U 5'  target: AT3G05690.1  miRNA: ath-miR169m miRNA: ath-miR169m mfe: -35.5 kcal/mol  p-value: 0.000177  position:  1182  target 5' A       A            C 3'             CAGGCAA UCAUCUUUGGCU              GUCCGUU AGUAGGAACCGA   miRNA  3'         C            U 5'  target: AT3G05690.1  miRNA: ath-miR169n miRNA: ath-miR169n mfe: -35.5 kcal/mol  p-value: 0.000335  position:  1182  target 5' A       A            C 3'             CAGGCAA UCAUCUUUGGCU              GUCCGUU AGUAGGAACCGA   miRNA  3'         C            U 5'  target: AT3G05690.1  miRNA: ath-miR407 miRNA: ath-miR407 mfe: -20.0 kcal/mol  p-value: 0.019122  position:  1327  target 5' A     U        U      A 3'             ACUAG AGUGUGUG UUUAAG              UGGUU UCAUAUAC AAAUUU   miRNA  3'       U        U        5'
Ortholog Group
Ortholog Groups: OG5_156221	Accession Taxon NP_187220 ( AT3G05690 ) Arabidopsis thaliana NP_196269 Arabidopsis thaliana NP_974741 Arabidopsis thaliana NP_974742 Arabidopsis thaliana NP_001050774 Oryza sativa Japonica Group NP_001058929 Oryza sativa Japonica Group NP_001067293 Oryza sativa Japonica Group 29333.m001059 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR12632 4.9E-65 54 292 IPR001289 CCAAT-binding transcription factor, subunit B SMART SM00521 1.3E-31 133 198 IPR001289 CCAAT-binding transcription factor, subunit B ProSiteProfiles PS51152 36.0 134 198 IPR001289 CCAAT-binding transcription factor, subunit B Pfam PF02045 4.3E-27 136 195 IPR001289 CCAAT-binding transcription factor, subunit B PRINTS PR00616 4.6E-21 137 159 IPR001289 CCAAT-binding transcription factor, subunit B PRINTS PR00616 4.6E-21 172 195 IPR001289 CCAAT-binding transcription factor, subunit B
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787