Leaf Senescence DataBase

Basic information

Locus name

AT1G72830

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Transcription regulation:CCAAT

Effect for Senescence

unclear

Gene Description

CCAAT-binding transcription factor (CBF-B/NF-YA) family protein

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology

biological process	regulation of transcription, DNA-dependent
molecular function	sequence-specific DNA binding transcription factor activity

Sequence

Microarray

Sampling

Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)

Comparation

Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.

miRNA Interaction

Details

target: AT1G72830.1
miRNA: ath-miR169h
miRNA: ath-miR169h
mfe: -39.6 kcal/mol
p-value: 0.000161

position:  1489
target 5' A   G                C 3'
           GGG AAGUCAUCCUUGGCUA
           UCC UUCAGUAGGAACCGAU
miRNA  3' G   G                  5'

target: AT1G72830.1
miRNA: ath-miR169i
miRNA: ath-miR169i
mfe: -39.6 kcal/mol
p-value: 0.000057

position:  1489
target 5' A   G                C 3'
           GGG AAGUCAUCCUUGGCUA
           UCC UUCAGUAGGAACCGAU
miRNA  3' G   G                  5'

target: AT1G72830.1
miRNA: ath-miR169j
miRNA: ath-miR169j
mfe: -39.6 kcal/mol
p-value: 0.000093

position:  1489
target 5' A   G                C 3'
           GGG AAGUCAUCCUUGGCUA
           UCC UUCAGUAGGAACCGAU
miRNA  3' G   G                  5'

target: AT1G72830.1
miRNA: ath-miR169k
miRNA: ath-miR169k
mfe: -39.6 kcal/mol
p-value: 0.000090

position:  1489
target 5' A   G                C 3'
           GGG AAGUCAUCCUUGGCUA
           UCC UUCAGUAGGAACCGAU
miRNA  3' G   G                  5'

target: AT1G72830.1
miRNA: ath-miR169l
miRNA: ath-miR169l
mfe: -39.6 kcal/mol
p-value: 0.000093

position:  1489
target 5' A   G                C 3'
           GGG AAGUCAUCCUUGGCUA
           UCC UUCAGUAGGAACCGAU
miRNA  3' G   G                  5'

target: AT1G72830.1
miRNA: ath-miR169m
miRNA: ath-miR169m
mfe: -39.6 kcal/mol
p-value: 0.000032

position:  1489
target 5' A   G                C 3'
           GGG AAGUCAUCCUUGGCUA
           UCC UUCAGUAGGAACCGAU
miRNA  3' G   G                  5'

target: AT1G72830.1
miRNA: ath-miR169n
miRNA: ath-miR169n
mfe: -39.6 kcal/mol
p-value: 0.000073

position:  1489
target 5' A   G                C 3'
           GGG AAGUCAUCCUUGGCUA
           UCC UUCAGUAGGAACCGAU
miRNA  3' G   G                  5'

target: AT1G72830.2
miRNA: ath-miR169h
miRNA: ath-miR169h
mfe: -39.6 kcal/mol
p-value: 0.000161

position:  1492
target 5' A   G                C 3'
           GGG AAGUCAUCCUUGGCUA
           UCC UUCAGUAGGAACCGAU
miRNA  3' G   G                  5'

target: AT1G72830.2
miRNA: ath-miR169i
miRNA: ath-miR169i
mfe: -39.6 kcal/mol
p-value: 0.000057

position:  1492
target 5' A   G                C 3'
           GGG AAGUCAUCCUUGGCUA
           UCC UUCAGUAGGAACCGAU
miRNA  3' G   G                  5'

target: AT1G72830.2
miRNA: ath-miR169j
miRNA: ath-miR169j
mfe: -39.6 kcal/mol
p-value: 0.000094

position:  1492
target 5' A   G                C 3'
           GGG AAGUCAUCCUUGGCUA
           UCC UUCAGUAGGAACCGAU
miRNA  3' G   G                  5'

target: AT1G72830.2
miRNA: ath-miR169k
miRNA: ath-miR169k
mfe: -39.6 kcal/mol
p-value: 0.000090

position:  1492
target 5' A   G                C 3'
           GGG AAGUCAUCCUUGGCUA
           UCC UUCAGUAGGAACCGAU
miRNA  3' G   G                  5'

target: AT1G72830.2
miRNA: ath-miR169l
miRNA: ath-miR169l
mfe: -39.6 kcal/mol
p-value: 0.000094

position:  1492
target 5' A   G                C 3'
           GGG AAGUCAUCCUUGGCUA
           UCC UUCAGUAGGAACCGAU
miRNA  3' G   G                  5'

target: AT1G72830.2
miRNA: ath-miR169m
miRNA: ath-miR169m
mfe: -39.6 kcal/mol
p-value: 0.000032

position:  1492
target 5' A   G                C 3'
           GGG AAGUCAUCCUUGGCUA
           UCC UUCAGUAGGAACCGAU
miRNA  3' G   G                  5'

target: AT1G72830.2
miRNA: ath-miR169n
miRNA: ath-miR169n
mfe: -39.6 kcal/mol
p-value: 0.000073

position:  1492
target 5' A   G                C 3'
           GGG AAGUCAUCCUUGGCUA
           UCC UUCAGUAGGAACCGAU
miRNA  3' G   G                  5'

target: AT1G72830.3
miRNA: ath-miR169h
miRNA: ath-miR169h
mfe: -39.6 kcal/mol
p-value: 0.000151

position:  1413
target 5' A   G                C 3'
           GGG AAGUCAUCCUUGGCUA
           UCC UUCAGUAGGAACCGAU
miRNA  3' G   G                  5'

target: AT1G72830.3
miRNA: ath-miR169i
miRNA: ath-miR169i
mfe: -39.6 kcal/mol
p-value: 0.000053

position:  1413
target 5' A   G                C 3'
           GGG AAGUCAUCCUUGGCUA
           UCC UUCAGUAGGAACCGAU
miRNA  3' G   G                  5'

target: AT1G72830.3
miRNA: ath-miR169j
miRNA: ath-miR169j
mfe: -39.6 kcal/mol
p-value: 0.000087

position:  1413
target 5' A   G                C 3'
           GGG AAGUCAUCCUUGGCUA
           UCC UUCAGUAGGAACCGAU
miRNA  3' G   G                  5'

target: AT1G72830.3
miRNA: ath-miR169k
miRNA: ath-miR169k
mfe: -39.6 kcal/mol
p-value: 0.000084

position:  1413
target 5' A   G                C 3'
           GGG AAGUCAUCCUUGGCUA
           UCC UUCAGUAGGAACCGAU
miRNA  3' G   G                  5'

target: AT1G72830.3
miRNA: ath-miR169l
miRNA: ath-miR169l
mfe: -39.6 kcal/mol
p-value: 0.000087

position:  1413
target 5' A   G                C 3'
           GGG AAGUCAUCCUUGGCUA
           UCC UUCAGUAGGAACCGAU
miRNA  3' G   G                  5'

target: AT1G72830.3
miRNA: ath-miR169m
miRNA: ath-miR169m
mfe: -39.6 kcal/mol
p-value: 0.000029

position:  1413
target 5' A   G                C 3'
           GGG AAGUCAUCCUUGGCUA
           UCC UUCAGUAGGAACCGAU
miRNA  3' G   G                  5'

target: AT1G72830.3
miRNA: ath-miR169n
miRNA: ath-miR169n
mfe: -39.6 kcal/mol
p-value: 0.000068

position:  1413
target 5' A   G                C 3'
           GGG AAGUCAUCCUUGGCUA
           UCC UUCAGUAGGAACCGAU
miRNA  3' G   G                  5'

Ortholog Group

Ortholog Groups: OG5_142871

Accession	Taxon
NP_001031272	Arabidopsis thaliana
NP_173202	Arabidopsis thaliana
NP_175818	Arabidopsis thaliana
NP_188018	Arabidopsis thaliana
NP_565049	Arabidopsis thaliana
NP_973850	Arabidopsis thaliana
NP_973851	Arabidopsis thaliana
NP_974134 ( AT1G72830 )	Arabidopsis thaliana
NP_001049132	Oryza sativa Japonica Group
NP_001050347	Oryza sativa Japonica Group
NP_001060240	Oryza sativa Japonica Group
29706.m001307	Ricinus communis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR12632	3.3E-80	48	340	IPR001289	CCAAT-binding transcription factor, subunit B
SMART	SM00521	5.5E-38	176	237	IPR001289	CCAAT-binding transcription factor, subunit B
ProSiteProfiles	PS51152	37.3	177	237	IPR001289	CCAAT-binding transcription factor, subunit B
Pfam	PF02045	1.2E-29	179	234	IPR001289	CCAAT-binding transcription factor, subunit B
PRINTS	PR00616	9.0E-24	180	202	IPR001289	CCAAT-binding transcription factor, subunit B
ProSitePatterns	PS00686	NA	182	202	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	9.0E-24	211	234	IPR001289	CCAAT-binding transcription factor, subunit B

Subcellular Localization

Localization

nucleus

Evidence

SUBAcon

Pubmed ID

23180787