Basic information
Locus name	AT4G12080
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:DNA-binding protein
Effect for Senescence	unclear
Gene Description	DNA-binding family protein contains a AT hook motif
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Sequence	AT4G12080.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_139537	Accession Taxon NP_191931 Arabidopsis thaliana NP_192945 ( AT4G12080 ) Arabidopsis thaliana NP_194008 Arabidopsis thaliana NP_001045744 Oryza sativa Japonica Group NP_001060866 Oryza sativa Japonica Group NP_001062218 Oryza sativa Japonica Group estExt_fgenesh1_pg.C_110043 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_2230073 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_350186 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_4690002 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_190000028 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_204000074 Physcomitrella patens subsp. patens gw1.157.72.1 Physcomitrella patens subsp. patens 30170.m013803 Ricinus communis 30190.m011046 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31500 3.8E-106 16 346 No hit NA SUPERFAMILY SSF117856 1.2E-32 169 291 No hit NA Pfam PF03479 7.2E-43 170 287 IPR005175 Domain of unknown function DUF296
Subcellular Localization
Localization 1 Localization mitochondria Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization cytoplasm and nucleus Evidence Localization with GFP-ORF fusion protein (GFP:cDNA) Pubmed ID 15610358
Localization 3 Localization nucleus Evidence SUBAcon Pubmed ID 23180787