Basic information
Locus name	AT5G39660
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:C2C2-Dof
Effect for Senescence	unclear
Gene Description	Dof-type zinc finger domain-containing protein
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function DNA binding zinc ion binding
Sequence	AT5G39660.1 | Genomic | mRNA | CDS | Protein AT5G39660.2 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT5G39660.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -27.8 kcal/mol  p-value: 0.002419  position:  409  target 5' G        U      U     A 3'             UGAUGAUG UGGUGA GGUGG              ACUGCUAC ACUACU CUACU   miRNA  3'          U      U       5'  target: AT5G39660.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -33.1 kcal/mol  p-value: 0.000163  position:  359  target 5' C                    U 3'             GAUGAUGAUGAUGAAGA GA              CUGCUACUACUACUUCU CU   miRNA  3' A                 A    5'  target: AT5G39660.1  miRNA: ath-miR869 miRNA: ath-miR869 mfe: -23.1 kcal/mol  p-value: 0.046602  position:  1528  target 5' G  G          C  G   A 3'             AA ACCGGAGUUG AA CGA              UU UGGUCUUAAC UU GUU   miRNA  3' G  G             G   A 5'  target: AT5G39660.2  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -27.8 kcal/mol  p-value: 0.002060  position:  382  target 5' G        U      U     A 3'             UGAUGAUG UGGUGA GGUGG              ACUGCUAC ACUACU CUACU   miRNA  3'          U      U       5'  target: AT5G39660.2  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -33.1 kcal/mol  p-value: 0.000135  position:  332  target 5' C                    U 3'             GAUGAUGAUGAUGAAGA GA              CUGCUACUACUACUUCU CU   miRNA  3' A                 A    5'  target: AT5G39660.2  miRNA: ath-miR869 miRNA: ath-miR869 mfe: -23.1 kcal/mol  p-value: 0.041626  position:  1501  target 5' G  G          C  G   A 3'             AA ACCGGAGUUG AA CGA              UU UGGUCUUAAC UU GUU   miRNA  3' G  G             G   A 5'
Ortholog Group
Ortholog Groups: OG5_150317	Accession Taxon NP_190334 Arabidopsis thaliana NP_568567 ( AT5G39660 ) Arabidopsis thaliana NP_851106 Arabidopsis thaliana NP_001042660 Oryza sativa Japonica Group NP_001042735 Oryza sativa Japonica Group NP_001060673 Oryza sativa Japonica Group estExt_fgenesh1_pg.C_370003 Physcomitrella patens subsp. patens 28838.m000250 Ricinus communis 30072.m000930 Ricinus communis 30138.m004065 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31089 6.6E-120 1 457 No hit NA Pfam PF02701 9.1E-37 134 193 IPR003851 Zinc finger, Dof-type ProSiteProfiles PS50884 28.6 138 192 IPR003851 Zinc finger, Dof-type ProSitePatterns PS01361 NA 140 176 IPR003851 Zinc finger, Dof-type
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787