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| Locus name | AT5G66620 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Transcription regulation:LIM |
| Effect for Senescence | unclear |
| Gene Description | LIM domain-containing protein |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT5G66620.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT5G66620.1
miRNA: ath-miR172a
miRNA: ath-miR172a
mfe: -24.0 kcal/mol
p-value: 0.045654
position: 1711
target 5' G U C U 3'
AUGCA CAUCAUCA G UUCU
UACGU GUAGUAGU C AAGA
miRNA 3' C U U 5'
target: AT5G66620.1
miRNA: ath-miR172b
miRNA: ath-miR172b
mfe: -24.0 kcal/mol
p-value: 0.038397
position: 1711
target 5' G U C U 3'
AUGCA CAUCAUCA G UUCU
UACGU GUAGUAGU C AAGA
miRNA 3' C U U 5'
target: AT5G66620.1
miRNA: ath-miR781
miRNA: ath-miR781
mfe: -22.8 kcal/mol
p-value: 0.073572
position: 457
target 5' C U G A 3'
UGA UGUUCAGGAGA UCUGA
AUU AUAGGUCUUUU AGAUU
miRNA 3' C G 5'
target: AT5G66620.1
miRNA: ath-miR781
miRNA: ath-miR781
mfe: -22.8 kcal/mol
p-value: 0.073572
position: 646
target 5' U U G A 3'
UGA UGUUCAGGAGA UCUAA
AUU AUAGGUCUUUU AGAUU
miRNA 3' C G 5'
target: AT5G66620.1
miRNA: ath-miR847
miRNA: ath-miR847
mfe: -35.6 kcal/mol
p-value: 0.000380
position: 231
target 5' U A 3'
CGUCAAGAGGAGGAGGAG GA
GUAGUUCUUCUUCUCCUC CU
miRNA 3' A 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_141458 | |
| Cross Link | |
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