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Locus name | AT1G02340 |
Alias | FBI1/HFR1/REP1/RSF1 | Organism | Arabidopsis thaliana | Taxonomic identifier | [NCBI] | Function category | Transcription regulation:bHLH | Effect for Senescence | unclear | Gene Description | long hypocotyl in far-red 1 (HFR1) / reduced phytochrome signaling (REP1) / basic helix- | Evidence | Genomic evidence:microarray data [Ref 1] | References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-852: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-WollastonHigh-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.Plant Cell 2011 Mar;23(3):873-94 | Gene Ontology | | Sequence | AT1G02340.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) | Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
| Details | | target: AT1G02340.1 miRNA: ath-miR826 miRNA: ath-miR826 mfe: -26.5 kcal/mol p-value: 0.013376
position: 277 target 5' A G C 3' ACG GUCUAAAAU GGGCUA UGC UAGGUUUUG CCUGAU miRNA 3' G A G 5'
target: AT1G02340.1 miRNA: ath-miR831 miRNA: ath-miR831 mfe: -25.3 kcal/mol p-value: 0.015269
position: 590 target 5' G A G G 3' AAGAAGAG ACGAG AGAU A UUCUUCUC UGCUU UCUA U miRNA 3' G A C G 5'
target: AT1G02340.1 miRNA: ath-miR837-5p miRNA: ath-miR837-5p mfe: -22.8 kcal/mol p-value: 0.047353
position: 243 target 5' A G 3' GAAA GAGCAAGAAG UGAU CUUU CUUGUUCUUU ACUA miRNA 3' A G G 5'
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Cross Link | |
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| Localization 1 | Localization | nucleus | Evidence | Localization with GFP-fusion protein (GFP:cDNA) | Pubmed ID | 10737809 |
| Localization 2 | Localization | nucleus | Evidence | SUBAcon | Pubmed ID | 23180787 |
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