Basic information
Locus name	AT3G04030
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:MYB
Effect for Senescence	unclear
Gene Description	myb family transcription factor
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function DNA binding chromatin binding
Sequence	AT3G04030.1 | Genomic | mRNA | CDS | Protein AT3G04030.2 | Genomic | mRNA | CDS | Protein AT3G04030.3 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT3G04030.1  miRNA: ath-miR775 miRNA: ath-miR775 mfe: -27.2 kcal/mol  p-value: 0.009792  position:  700  target 5' C     A             G 3'             GGUGC GCUGGG AUCGAA              CCGUG CGAUCU UAGCUU   miRNA  3' A     A      G        5'  target: AT3G04030.2  miRNA: ath-miR775 miRNA: ath-miR775 mfe: -27.2 kcal/mol  p-value: 0.009743  position:  695  target 5' C     A             G 3'             GGUGC GCUGGG AUCGAA              CCGUG CGAUCU UAGCUU   miRNA  3' A     A      G        5'  target: AT3G04030.3  miRNA: ath-miR775 miRNA: ath-miR775 mfe: -27.2 kcal/mol  p-value: 0.009957  position:  717  target 5' C     A             G 3'             GGUGC GCUGGG AUCGAA              CCGUG CGAUCU UAGCUU   miRNA  3' A     A      G        5'
Ortholog Group
Ortholog Groups: OG5_150236	Accession Taxon NP_001118567 ( AT3G04030 ) Arabidopsis thaliana NP_187053 Arabidopsis thaliana NP_197325 Arabidopsis thaliana NP_850842 Arabidopsis thaliana NP_974216 Arabidopsis thaliana NP_974797 Arabidopsis thaliana NP_974798 Arabidopsis thaliana NP_974799 Arabidopsis thaliana NP_001049984 Oryza sativa Japonica Group 29950.m001149 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31499 4.5E-107 2 393 No hit NA ProSiteProfiles PS51294 11.5 42 101 IPR017930 Myb domain SUPERFAMILY SSF46689 6.3E-17 44 99 IPR009057 Homeodomain-like TIGRFAM TIGR01557 9.8E-22 45 99 IPR006447 Myb domain, plants Pfam PF00249 1.7E-18 47 97 IPR001005 SANT/Myb domain Pfam PF14379 1.9E-23 145 192 IPR025756 MYB-CC type transcription factor, LHEQLE-containing domain