Basic information
Locus name	AT1G06180
Alias	ATMYB13
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:MYB
Effect for Senescence	unclear
Gene Description	myb family transcription factor. Gene expression is up-regulated in senescent leaves.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85 2: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function chromatin binding
Sequence	AT1G06180.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_211871	Accession Taxon NP_172108 ( AT1G06180 ) Arabidopsis thaliana NP_180676 Arabidopsis thaliana
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10641 4.2E-87 1 244 No hit NA ProSiteProfiles PS51294 16.6 9 61 IPR017930 Myb domain SUPERFAMILY SSF46689 8.6E-30 11 108 IPR009057 Homeodomain-like SMART SM00717 7.7E-14 13 63 IPR001005 SANT/Myb domain Pfam PF00249 1.1E-14 14 61 IPR001005 SANT/Myb domain ProSiteProfiles PS51294 23.5 62 116 IPR017930 Myb domain SMART SM00717 1.4E-13 66 114 IPR001005 SANT/Myb domain Pfam PF00249 1.5E-13 67 112 IPR001005 SANT/Myb domain