Basic information
Locus name	AT5G18270
Alias	ANAC087
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:NAC
Effect for Senescence	unclear
Gene Description	no apical meristem (NAM) family protein contains Pfam PF02365 : No apical meristem (NAM)
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function DNA binding
Sequence	AT5G18270.1 | Genomic | mRNA | CDS | Protein AT5G18270.2 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT5G18270.1  miRNA: ath-miR867 miRNA: ath-miR867 mfe: -22.4 kcal/mol  p-value: 0.025731  position:  1295  target 5' A       U      U    C 3'             UCCUAGU AACUAU UUCA              AGGAUUA UUGGUA AAGU   miRNA  3' A       U      C    U 5'  target: AT5G18270.2  miRNA: ath-miR867 miRNA: ath-miR867 mfe: -22.4 kcal/mol  p-value: 0.025731  position:  1295  target 5' A       U      U    C 3'             UCCUAGU AACUAU UUCA              AGGAUUA UUGGUA AAGU   miRNA  3' A       U      C    U 5'
Ortholog Group
Ortholog Groups: OG5_164511	Accession Taxon NP_187056 Arabidopsis thaliana NP_197328 ( AT5G18270 ) Arabidopsis thaliana NP_974800 Arabidopsis thaliana NP_001049994 Oryza sativa Japonica Group NP_001060671 Oryza sativa Japonica Group 29950.m001171 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31744 9.5E-158 2 335 No hit NA PANTHER PTHR31744 1.3E-158 2 335 No hit NA SUPERFAMILY SSF101941 3.0E-62 18 173 IPR003441 No apical meristem (NAM) protein SUPERFAMILY SSF101941 1.4E-62 18 173 IPR003441 No apical meristem (NAM) protein Pfam PF02365 9.6E-54 21 148 IPR003441 No apical meristem (NAM) protein Pfam PF02365 7.8E-54 21 148 IPR003441 No apical meristem (NAM) protein ProSiteProfiles PS51005 58.2 21 172 IPR003441 No apical meristem (NAM) protein ProSiteProfiles PS51005 58.4 21 172 IPR003441 No apical meristem (NAM) protein
Mutant Image
nac87 mutant exhibited normal senescence.
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787