Basic information
Locus name	AT2G29140
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	pumilio/Puf RNA-binding domain-containing protein
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function RNA binding
Sequence	AT2G29140.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_126869	Accession Taxon NP_001031720 Arabidopsis thaliana NP_180478 ( AT2G29140 ) Arabidopsis thaliana NP_180482 Arabidopsis thaliana NP_180483 Arabidopsis thaliana NP_187647 Arabidopsis thaliana NP_188660 Arabidopsis thaliana NP_567733 Arabidopsis thaliana NP_974618 Arabidopsis thaliana CMR410C Cyanidioschyzon merolae strain 10D 123505 Chlamydomonas reinhardtii ACO64984 Micromonas sp. RCC299 NP_001044782 Oryza sativa Japonica Group NP_001045538 Oryza sativa Japonica Group NP_001048533 Oryza sativa Japonica Group NP_001054436 Oryza sativa Japonica Group NP_001062262 Oryza sativa Japonica Group NP_001063558 Oryza sativa Japonica Group NP_001067100 Oryza sativa Japonica Group e_gw1.96.1.1 Physcomitrella patens subsp. patens e_gw1.96.3.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_350182 Physcomitrella patens subsp. patens estExt_Genewise1.C_960051 Physcomitrella patens subsp. patens 29595.m000292 Ricinus communis 30143.m001162 Ricinus communis 30143.m001164 Ricinus communis 30169.m006300 Ricinus communis e_gw1.13.84.1 Thalassiosira pseudonana CCMP1335 e_gw1.2.151.1 Thalassiosira pseudonana CCMP1335 e_gw1.2.252.1 Thalassiosira pseudonana CCMP1335 estExt_thaps1_ua_kg.C_chr_50286 Thalassiosira pseudonana CCMP1335 gw1.7.168.1 Thalassiosira pseudonana CCMP1335 thaps1_ua_kg.chr_5000072 Thalassiosira pseudonana CCMP1335 XP_002958359 Volvox carteri f. nagariensis XP_002959184 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR12537 0.0 1 960 No hit NA Pfam PF07990 2.8E-157 265 625 IPR012940 Nucleic acid binding NABP ProSiteProfiles PS50303 133.1 606 946 IPR001313 Pumilio RNA-binding repeat SUPERFAMILY SSF48371 8.1E-119 609 943 IPR016024 Armadillo-type fold ProSiteProfiles PS50302 11.6 626 661 IPR001313 Pumilio RNA-binding repeat SMART SM00025 5.2E-6 626 661 IPR001313 Pumilio RNA-binding repeat Pfam PF00806 1.0E-6 627 657 IPR001313 Pumilio RNA-binding repeat ProSiteProfiles PS50302 9.6 662 697 IPR001313 Pumilio RNA-binding repeat SMART SM00025 2.3E-5 662 697 IPR001313 Pumilio RNA-binding repeat Pfam PF00806 9.3E-7 666 694 IPR001313 Pumilio RNA-binding repeat Pfam PF00806 1.2E-5 698 731 IPR001313 Pumilio RNA-binding repeat ProSiteProfiles PS50302 10.6 698 733 IPR001313 Pumilio RNA-binding repeat SMART SM00025 2.4E-7 698 733 IPR001313 Pumilio RNA-binding repeat ProSiteProfiles PS50302 10.3 734 769 IPR001313 Pumilio RNA-binding repeat SMART SM00025 3.2E-8 734 769 IPR001313 Pumilio RNA-binding repeat Pfam PF00806 4.9E-7 737 768 IPR001313 Pumilio RNA-binding repeat ProSiteProfiles PS50302 10.7 770 806 IPR001313 Pumilio RNA-binding repeat SMART SM00025 7.1E-7 770 806 IPR001313 Pumilio RNA-binding repeat Pfam PF00806 2.8E-9 771 801 IPR001313 Pumilio RNA-binding repeat ProSiteProfiles PS50302 12.0 807 842 IPR001313 Pumilio RNA-binding repeat SMART SM00025 3.0E-5 807 842 IPR001313 Pumilio RNA-binding repeat Pfam PF00806 7.4E-6 815 836 IPR001313 Pumilio RNA-binding repeat ProSiteProfiles PS50302 9.9 843 878 IPR001313 Pumilio RNA-binding repeat SMART SM00025 8.9E-7 843 878 IPR001313 Pumilio RNA-binding repeat Pfam PF00806 5.6E-6 844 876 IPR001313 Pumilio RNA-binding repeat ProSiteProfiles PS50302 10.0 879 920 IPR001313 Pumilio RNA-binding repeat SMART SM00025 6.2E-7 885 920 IPR001313 Pumilio RNA-binding repeat Pfam PF00806 3.0E-7 893 919 IPR001313 Pumilio RNA-binding repeat ProSiteProfiles PS50302 5.3 921 956 IPR001313 Pumilio RNA-binding repeat
Subcellular Localization
Localization	cytosol,nucleus
Evidence	SUBAcon
Pubmed ID	23180787