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Locus name | AT3G20250 |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Others |
Effect for Senescence | unclear |
Gene Description | pumilio/Puf RNA-binding domain-containing protein contains Pfam profile: PF00806 Pumilio- |
Evidence | Genomic evidence:microarray data [Ref 1] |
References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
Gene Ontology | |
Sequence | AT3G20250.1 | Genomic | mRNA | CDS | Protein
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Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) |
Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
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Details | | target: AT3G20250.1 miRNA: ath-miR1886 miRNA: ath-miR1886 mfe: -19.1 kcal/mol p-value: 0.400610
position: 197 target 5' U U G C 3' AGUGA A UGGGAUCUUUGGUU UCAUU U ACUUUAGAAAUUAA miRNA 3' C 5'
target: AT3G20250.1 miRNA: ath-miR2112-5p miRNA: ath-miR2112-5p mfe: -28.6 kcal/mol p-value: 0.002410
position: 2558 target 5' A A U 3' AUAUUGG AUCUGCGUUUGC UGUAACU UAGGCGUAAACG miRNA 3' A C 5'
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Ortholog Group | |
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Ortholog Groups: OG5_126869 | |
Cross Link | |
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Localization | cytosol,nucleus |
Evidence | SUBAcon |
Pubmed ID | 23180787 |