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| Locus name | AT5G61960 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Others |
| Effect for Senescence | unclear |
| Gene Description | RNA recognition motif (RRM)-containing protein Mei2-like protein |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT5G61960.1 | Genomic | mRNA | CDS | Protein
AT5G61960.2 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT5G61960.1
miRNA: ath-miR854a
miRNA: ath-miR854a
mfe: -29.6 kcal/mol
p-value: 0.028358
position: 498
target 5' U A A G 3'
CUCUUUC UCUCUGUCU CAUC
GAGGAGG AGGGAUAGG GUAG
miRNA 3' A 5'
target: AT5G61960.1
miRNA: ath-miR854b
miRNA: ath-miR854b
mfe: -29.6 kcal/mol
p-value: 0.027889
position: 498
target 5' U A A G 3'
CUCUUUC UCUCUGUCU CAUC
GAGGAGG AGGGAUAGG GUAG
miRNA 3' A 5'
target: AT5G61960.1
miRNA: ath-miR854c
miRNA: ath-miR854c
mfe: -29.6 kcal/mol
p-value: 0.027468
position: 498
target 5' U A A G 3'
CUCUUUC UCUCUGUCU CAUC
GAGGAGG AGGGAUAGG GUAG
miRNA 3' A 5'
target: AT5G61960.1
miRNA: ath-miR854d
miRNA: ath-miR854d
mfe: -29.6 kcal/mol
p-value: 0.030818
position: 498
target 5' U A A G 3'
CUCUUUC UCUCUGUCU CAUC
GAGGAGG AGGGAUAGG GUAG
miRNA 3' A 5'
target: AT5G61960.1
miRNA: ath-miR854e
miRNA: ath-miR854e
mfe: -29.6 kcal/mol
p-value: 0.029343
position: 498
target 5' U A A G 3'
CUCUUUC UCUCUGUCU CAUC
GAGGAGG AGGGAUAGG GUAG
miRNA 3' A 5'
target: AT5G61960.1
miRNA: ath-miR865-5p
miRNA: ath-miR865-5p
mfe: -23.0 kcal/mol
p-value: 0.038893
position: 1
target 5' A A A 3'
UCGA U GGUCCAGAUUCA
AGUU A CUAGGUUUAAGU
miRNA 3' G A U A 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_131900 | |
| Cross Link | |
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| Localization | nucleus |
| Evidence | SUBAcon |
| Pubmed ID | 23180787 |
