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| Locus name | AT3G02150 |
| Alias | PTF1/TFPD |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Transcription regulation:TCP |
| Effect for Senescence | unclear |
| Gene Description | TCP family transcription factor, putative similar to transcription factor PCF6 [Oryza sativa |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Sequence | AT3G02150.1 | Genomic | mRNA | CDS | Protein
AT3G02150.2 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT3G02150.1
miRNA: ath-miR854a
miRNA: ath-miR854a
mfe: -29.4 kcal/mol
p-value: 0.008835
position: 74
target 5' U U C 3'
UUCUUCUCUCUAU UCUCAUU
AGGAGGAGGGAUA GGAGUAG
miRNA 3' G 5'
target: AT3G02150.1
miRNA: ath-miR854b
miRNA: ath-miR854b
mfe: -29.4 kcal/mol
p-value: 0.010309
position: 74
target 5' U U C 3'
UUCUUCUCUCUAU UCUCAUU
AGGAGGAGGGAUA GGAGUAG
miRNA 3' G 5'
target: AT3G02150.1
miRNA: ath-miR854c
miRNA: ath-miR854c
mfe: -29.4 kcal/mol
p-value: 0.008836
position: 74
target 5' U U C 3'
UUCUUCUCUCUAU UCUCAUU
AGGAGGAGGGAUA GGAGUAG
miRNA 3' G 5'
target: AT3G02150.1
miRNA: ath-miR854d
miRNA: ath-miR854d
mfe: -29.4 kcal/mol
p-value: 0.009277
position: 74
target 5' U U C 3'
UUCUUCUCUCUAU UCUCAUU
AGGAGGAGGGAUA GGAGUAG
miRNA 3' G 5'
target: AT3G02150.1
miRNA: ath-miR854e
miRNA: ath-miR854e
mfe: -29.4 kcal/mol
p-value: 0.010585
position: 74
target 5' U U C 3'
UUCUUCUCUCUAU UCUCAUU
AGGAGGAGGGAUA GGAGUAG
miRNA 3' G 5'
target: AT3G02150.2
miRNA: ath-miR854a
miRNA: ath-miR854a
mfe: -29.4 kcal/mol
p-value: 0.009479
position: 74
target 5' U U C 3'
UUCUUCUCUCUAU UCUCAUU
AGGAGGAGGGAUA GGAGUAG
miRNA 3' G 5'
target: AT3G02150.2
miRNA: ath-miR854b
miRNA: ath-miR854b
mfe: -29.4 kcal/mol
p-value: 0.010946
position: 74
target 5' U U C 3'
UUCUUCUCUCUAU UCUCAUU
AGGAGGAGGGAUA GGAGUAG
miRNA 3' G 5'
target: AT3G02150.2
miRNA: ath-miR854c
miRNA: ath-miR854c
mfe: -29.4 kcal/mol
p-value: 0.009462
position: 74
target 5' U U C 3'
UUCUUCUCUCUAU UCUCAUU
AGGAGGAGGGAUA GGAGUAG
miRNA 3' G 5'
target: AT3G02150.2
miRNA: ath-miR854d
miRNA: ath-miR854d
mfe: -29.4 kcal/mol
p-value: 0.009974
position: 74
target 5' U U C 3'
UUCUUCUCUCUAU UCUCAUU
AGGAGGAGGGAUA GGAGUAG
miRNA 3' G 5'
target: AT3G02150.2
miRNA: ath-miR854e
miRNA: ath-miR854e
mfe: -29.4 kcal/mol
p-value: 0.011257
position: 74
target 5' U U C 3'
UUCUUCUCUCUAU UCUCAUU
AGGAGGAGGGAUA GGAGUAG
miRNA 3' G 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_164606 | |
| Cross Link | |
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| Localization 1 | | Localization | chloroplast | | Evidence | Localization with GFP-fusion protein (GFP:cDNA) | | Pubmed ID | 10737809 |
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| Localization 2 | | Localization | nucleus | | Evidence | SUBAcon | | Pubmed ID | 23180787 |
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| Localization 3 | | Localization | plastid | | Evidence | SUBAcon | | Pubmed ID | 23180787 |
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