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| Locus name | AT5G59430 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Others |
| Effect for Senescence | unclear |
| Gene Description | telomere repeat-binding protein 1 (TRP1) identical to telomere repeat-binding protein TRP1 |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT5G59430.1 | Genomic | mRNA | CDS | Protein
AT5G59430.2 | Genomic | mRNA | CDS | Protein
AT5G59430.3 | Genomic | mRNA | CDS | Protein
AT5G59430.4 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT5G59430.1
miRNA: ath-miR399b
miRNA: ath-miR399b
mfe: -28.2 kcal/mol
p-value: 0.015735
position: 1933
target 5' G U U U U 3'
AGG CG CUCUCCUUUG GUA
UCC GU GAGAGGAAAC CGU
miRNA 3' G C U 5'
target: AT5G59430.1
miRNA: ath-miR399c
miRNA: ath-miR399c
mfe: -28.2 kcal/mol
p-value: 0.017906
position: 1933
target 5' G U U U U 3'
AGG CG CUCUCCUUUG GUA
UCC GU GAGAGGAAAC CGU
miRNA 3' G C U 5'
target: AT5G59430.1
miRNA: ath-miR426
miRNA: ath-miR426
mfe: -21.5 kcal/mol
p-value: 0.024474
position: 403
target 5' U A G C G 3'
GU AAGGA GAAUU CCGGAG
CA UUCCU UUUAA GGUUUU
miRNA 3' G G A 5'
target: AT5G59430.1
miRNA: ath-miR775
miRNA: ath-miR775
mfe: -26.1 kcal/mol
p-value: 0.030199
position: 836
target 5' U A 3'
UGGC UU CUAGACAUUGGA
ACCG GA GAUCUGUAGCUU
miRNA 3' U C 5'
target: AT5G59430.1
miRNA: ath-miR869
miRNA: ath-miR869
mfe: -23.5 kcal/mol
p-value: 0.044187
position: 1172
target 5' G U G 3'
GACACC GAGUUGG CUGAU
UUGUGG CUUAACU GGUUA
miRNA 3' G U U 5'
target: AT5G59430.2
miRNA: ath-miR399b
miRNA: ath-miR399b
mfe: -28.2 kcal/mol
p-value: 0.017471
position: 2127
target 5' G U U U U 3'
AGG CG CUCUCCUUUG GUA
UCC GU GAGAGGAAAC CGU
miRNA 3' G C U 5'
target: AT5G59430.2
miRNA: ath-miR399c
miRNA: ath-miR399c
mfe: -28.2 kcal/mol
p-value: 0.019593
position: 2127
target 5' G U U U U 3'
AGG CG CUCUCCUUUG GUA
UCC GU GAGAGGAAAC CGU
miRNA 3' G C U 5'
target: AT5G59430.2
miRNA: ath-miR426
miRNA: ath-miR426
mfe: -21.5 kcal/mol
p-value: 0.026264
position: 597
target 5' U A G C G 3'
GU AAGGA GAAUU CCGGAG
CA UUCCU UUUAA GGUUUU
miRNA 3' G G A 5'
target: AT5G59430.2
miRNA: ath-miR775
miRNA: ath-miR775
mfe: -26.1 kcal/mol
p-value: 0.033280
position: 1030
target 5' U A 3'
UGGC UU CUAGACAUUGGA
ACCG GA GAUCUGUAGCUU
miRNA 3' U C 5'
target: AT5G59430.2
miRNA: ath-miR869
miRNA: ath-miR869
mfe: -23.5 kcal/mol
p-value: 0.047835
position: 1366
target 5' G U G 3'
GACACC GAGUUGG CUGAU
UUGUGG CUUAACU GGUUA
miRNA 3' G U U 5'
target: AT5G59430.3
miRNA: ath-miR399b
miRNA: ath-miR399b
mfe: -28.2 kcal/mol
p-value: 0.016683
position: 2039
target 5' G U U U U 3'
AGG CG CUCUCCUUUG GUA
UCC GU GAGAGGAAAC CGU
miRNA 3' G C U 5'
target: AT5G59430.3
miRNA: ath-miR399c
miRNA: ath-miR399c
mfe: -28.2 kcal/mol
p-value: 0.018831
position: 2039
target 5' G U U U U 3'
AGG CG CUCUCCUUUG GUA
UCC GU GAGAGGAAAC CGU
miRNA 3' G C U 5'
target: AT5G59430.3
miRNA: ath-miR426
miRNA: ath-miR426
mfe: -21.5 kcal/mol
p-value: 0.025459
position: 597
target 5' U A G C G 3'
GU AAGGA GAAUU CCGGAG
CA UUCCU UUUAA GGUUUU
miRNA 3' G G A 5'
target: AT5G59430.3
miRNA: ath-miR775
miRNA: ath-miR775
mfe: -26.1 kcal/mol
p-value: 0.031885
position: 1030
target 5' U A 3'
UGGC UU CUAGACAUUGGA
ACCG GA GAUCUGUAGCUU
miRNA 3' U C 5'
target: AT5G59430.3
miRNA: ath-miR869
miRNA: ath-miR869
mfe: -23.5 kcal/mol
p-value: 0.046191
position: 1366
target 5' G U G 3'
GACACC GAGUUGG CUGAU
UUGUGG CUUAACU GGUUA
miRNA 3' G U U 5'
target: AT5G59430.4
miRNA: ath-miR399b
miRNA: ath-miR399b
mfe: -28.2 kcal/mol
p-value: 0.017462
position: 2126
target 5' G U U U U 3'
AGG CG CUCUCCUUUG GUA
UCC GU GAGAGGAAAC CGU
miRNA 3' G C U 5'
target: AT5G59430.4
miRNA: ath-miR399c
miRNA: ath-miR399c
mfe: -28.2 kcal/mol
p-value: 0.019584
position: 2126
target 5' G U U U U 3'
AGG CG CUCUCCUUUG GUA
UCC GU GAGAGGAAAC CGU
miRNA 3' G C U 5'
target: AT5G59430.4
miRNA: ath-miR426
miRNA: ath-miR426
mfe: -21.5 kcal/mol
p-value: 0.026255
position: 596
target 5' U A G C G 3'
GU AAGGA GAAUU CCGGAG
CA UUCCU UUUAA GGUUUU
miRNA 3' G G A 5'
target: AT5G59430.4
miRNA: ath-miR775
miRNA: ath-miR775
mfe: -26.1 kcal/mol
p-value: 0.033264
position: 1029
target 5' U A 3'
UGGC UU CUAGACAUUGGA
ACCG GA GAUCUGUAGCUU
miRNA 3' U C 5'
target: AT5G59430.4
miRNA: ath-miR869
miRNA: ath-miR869
mfe: -23.5 kcal/mol
p-value: 0.047817
position: 1365
target 5' G U G 3'
GACACC GAGUUGG CUGAU
UUGUGG CUUAACU GGUUA
miRNA 3' G U U 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_153164 | |
| Cross Link | |
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